KEGG   Methanosarcina barkeri 3: MSBR3_3242
Entry
MSBR3_3242        CDS       T04533                                 
Name
(GenBank) Flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
mbak  Methanosarcina barkeri 3
Pathway
mbak03030  DNA replication
mbak03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mbak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSBR3_3242
   03410 Base excision repair
    MSBR3_3242
   03450 Non-homologous end-joining
    MSBR3_3242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbak03032]
    MSBR3_3242
   03400 DNA repair and recombination proteins [BR:mbak03400]
    MSBR3_3242
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mbak04147]
    MSBR3_3242
DNA replication proteins [BR:mbak03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSBR3_3242
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSBR3_3242
DNA repair and recombination proteins [BR:mbak03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSBR3_3242
Exosome [BR:mbak04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   MSBR3_3242
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AKB83820
UniProt: A0A0E3WZW5
LinkDB
Position
4257766..4258908
AA seq 380 aa
MISTFCITVKKLKIRLKNKNRLIKQVMKAQSFLLTFRHSRENMGTDIGDLLQKRKVELSD
LTNQVVAIDAFNTLHQFLSIIRQRDGSPLVDSAGRVTSHLSGLLYRTASLVEAGVKPLFV
FDGKPPDLKSETLNRRKEVRESSREKWENAKAVGDLESAYKYAQASSKVNQEIVEDSKYL
LNVMGVPFVQAPCEGEAQAAHMVLKKDANCVASQDYDSFLFGAPIVVRNLAVTGKRKLPG
KNMYVDVEPEKIELDETLEALEITREQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGD
IYSVLNEKKAEIEAVDQIRDIFLHPEVTDDYKIRWEKPDSEKLLEFLCEGHDFSIDRVGK
AAERLKTASGARQKTLDQWF
NT seq 1143 nt   +upstreamnt  +downstreamnt
ttgatatctactttctgcataacagttaaaaaattaaaaataagattaaaaaataagaat
agattaataaagcaagtaatgaaagctcaaagctttctattaactttcagacattcgagg
gaaaacatgggcacagatataggcgacctgctccagaaaagaaaagttgagctttcggat
cttacaaatcaggtagttgcaatcgatgcatttaatacgctgcaccagtttttgagcatc
attcgccagcgggatggaagtcctctggttgattctgcagggagagtaacctcccatctc
tcaggcctgctctaccgaacagcgagccttgtagaagccggtgtcaaacctctttttgtt
tttgacggcaaacctcctgatctcaagtccgaaaccctgaaccgaagaaaagaagtaagg
gaatcctccagggaaaaatgggagaatgcaaaagctgtaggggacctggagtcggcgtat
aagtatgctcaggcttcttcgaaagtaaatcaggaaattgttgaagattccaaatatctc
ctcaacgttatgggagttccctttgttcaggccccctgcgaaggcgaagcacaggctgca
cacatggttctcaaaaaagacgccaactgcgttgcttcgcaggattacgactcctttctt
ttcggggctccgattgttgtcagaaacctggctgtaacaggaaaacggaagcttccggga
aagaacatgtatgttgatgtcgaaccagaaaaaatcgagctggacgagaccctcgaagcc
ctggaaattacacgggagcagcttatagatatcgctatctgtgtgggcacggattataac
aaagggctggagaaagtaggcccgaaaacagcccttaaattaattaaaaagcacggggat
atttattccgtacttaacgaaaaaaaagcagaaattgaagctgtggatcagataagagac
atttttctccatcctgaagtaacggatgattacaaaataagatgggaaaaacctgactct
gaaaaacttctcgaatttctatgcgaggggcacgatttctcgattgatagggtaggaaaa
gctgcagaacgacttaaaacggcctcaggagctagacagaaaactcttgatcagtggttt
taa

DBGET integrated database retrieval system