Methanosarcina barkeri 227: MSBR2_1395
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Entry
MSBR2_1395 CDS
T03914
Name
(GenBank) Phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mbar
Methanosarcina barkeri 227
Pathway
mbar03410
Base excision repair
mbar03430
Mismatch repair
mbar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSBR2_1395
03430 Mismatch repair
MSBR2_1395
03440 Homologous recombination
MSBR2_1395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbar03400
]
MSBR2_1395
DNA repair and recombination proteins [BR:
mbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MSBR2_1395
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MSBR2_1395
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSBR2_1395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AKB57911
UniProt:
A0A0E3LQA1
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All DBs
Position
complement(1793453..1794478)
Genome browser
AA seq
341 aa
AA seq
DB search
MTLEKINIFSGKRKQNMKELHNWIKAKTLVLTHGDSDGICSGAIAKTAYPDAYVYFTNPV
NLLEKLGLIKNVKTLIICDIAIDERNCSELHAALRGFAEKCNLYYIDHHPLPKSCEKESW
FYHDIEACSAELTYRLLEDRLDRDMRRIAIYGAIGDFCDNTPCLKSWVKDWDKRNLYFQA
GTLTQAILYKGRDYEFKRKLLEPLSKDIIPSNIPELLKLAREAAINEERLRLFVKYNVEA
LKNSAYIVNTNNSISKAAIYAASYGRREVGIAAEFRERKGAYDLSIRSRGEVDINNILRS
VAPRFGGSGGGHPLAAGARIPEDSLNAFLKAFDKELGEAHG
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
ttgacattagaaaaaataaatattttttcgggaaaaaggaagcaaaacatgaaagaactc
cataactggatcaaagcgaaaactctagttcttactcacggagattcggatggtatatgc
tcaggtgcgattgcaaaaaccgcttatccggatgcatatgtgtatttcacgaatcctgta
aaccttcttgaaaaattagggcttataaaaaatgtgaaaacccttattatttgcgatatt
gcaatcgatgaaaggaactgctctgaacttcatgcagcacttagaggatttgcggagaag
tgcaacctttactatattgaccaccaccctctcccgaaaagctgtgaaaaagagagctgg
ttctaccatgatatcgaagcttgttccgcagagttgacctacaggctcttagaggatcgc
ctggacagagatatgcgtaggatagcaatctatggagcgattggggatttttgtgacaac
actccatgtttaaagagctgggtcaaagattgggataaaaggaatctttattttcaggcc
ggaaccctgacccaggccatcctatataaaggaagggattacgaattcaaaaggaaactt
cttgaacccctctcaaaagacataatcccttcaaatattccggaactgcttaagcttgcc
agggaagctgcaattaacgaggagagattaaggctttttgttaaatataatgtggaagct
cttaaaaatagtgcatatattgtaaatacaaataactctatttcaaaggcagcgatctac
gcagcttcttacggcaggcgggaagtagggattgcagccgaattccgtgaaagaaaggga
gcttatgacctcagtatccgctccaggggagaggtcgacataaacaatattctccgttca
gtcgcaccaagattcggaggaagcggcggtggacatccccttgcggcaggcgctcgaatt
cctgaagattcccttaacgcattcctcaaagcttttgataaggaactgggagaagcacat
gggtaa
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