Methanosarcina barkeri 227: MSBR2_2770
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Entry
MSBR2_2770 CDS
T03914
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbar
Methanosarcina barkeri 227
Pathway
mbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBR2_2770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbar03019
]
MSBR2_2770
03009 Ribosome biogenesis [BR:
mbar03009
]
MSBR2_2770
Enzymes [BR:
mbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSBR2_2770
Messenger RNA biogenesis [BR:
mbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSBR2_2770
Ribosome biogenesis [BR:
mbar03009
]
Prokaryotic type
rRNA helicases
MSBR2_2770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
AAA_30
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AKB59286
UniProt:
A0A0E3LR26
LinkDB
All DBs
Position
3605149..3606888
Genome browser
AA seq
579 aa
AA seq
DB search
MEKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFMKGECDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQLRM
LKSGVDIVVGTPGRVIDHLERKSLNLKDIAYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIIKKHMKNYEHVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTAQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSEMKRGRIPEIKDVIKAKRARVKTELEETIKTEDYGDCLEMSEKLLEEYPAEKILA
ALLKYSFKEMFDESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFIQEETGEHD
LKVRDAEIFPHFSFVTVPFAQASALLEIFKDKKRGRKPFIELAQKSKKRSSKSSDDYRGG
TRNGSRNYSRNDSWNGSRNTNSKSYTRDTRTAKKKYSSY
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcattggggctttcagacagtatgttaaaagccctt
aaaaagaaagggtttgaagaaccaaccccaattcaggaaaaagtcatcccgctttttatg
aaaggagaatgtgatattatagggcaggctcagaccggaaccgggaaaacaacggctttc
ggagcccccattatagaaaaaattccggagaaatcaggaaaggtacaggcgatagtcctg
accccgactcgagaattagcaatccaggtctcagaagaacttaactctctgaaaggagac
aaaaagctacatattgtcccgatttatgggggacagtccatgacccagcaactcagaatg
ctgaaaagcggagttgatattgtcgtgggaactccaggaagagtcatcgatcaccttgag
cgaaagagtttgaaccttaaggacatcgcgtatttcgtactggacgaagctgatgaaatg
ctcaatatgggctttattgatgatattaaggaaatattaaaggcaaccgggcctgataag
agaatgcttttcttttcagctacaatgccaaagcctatccttggcatcatcaagaaacac
atgaagaactatgaacatgttgcaattaagaaagaagatcttgatgtaaacctaactgag
cagatttattttgaagtcaaggaaagcgacaaatttgaagccctgtgcaggattatcgat
attgaagacgaattctacgggcttgtgttctgcagaacaaaaaccgataccgcgcaactt
gcccagaagcttggagacaggggatatgcagccgatgcactgcacggcgatctttcccag
cgtgaaagggaaaagatactgaacaggttcagaaaacaaaagataaatatcctcgtagca
accgacgttgcagctcgaggtatcgatatcatggacctgacccatgtaattaactattcc
cttccgcaagaccctgagtcctacgtacacaggatcggaagaaccggccgggcaggaaag
cagggaactgcaattactttcgttacatccacggaatacaggcggctcacttacataaaa
aagacctcaaagtccgaaatgaaaagaggcagaattcccgagataaaagatgtaataaaa
gccaaaagggcaagagtaaaaaccgaacttgaagagactataaaaactgaagactacggc
gactgccttgagatgagtgaaaaactccttgaagaatacccggccgagaaaatcctggct
gccctcctgaagtattctttcaaagagatgttcgacgaaagcatgtacacagagatctct
ggaagttcatatgtcgaccggaaaggcaaaaccaggcttttcatcgcaatgggaaaagct
gacggcatgacccctgagaagctgtgcgagtttatacaggaagaaaccggagaacacgac
ctgaaagtcagagatgcagaaattttcccgcacttctccttcgtaaccgtaccttttgct
caggcttcagccctgcttgaaattttcaaagacaaaaagagagggcgaaagccctttata
gagcttgcccagaaatcaaagaaaagaagctcaaagagttcggatgactatcgcggtggc
actcgcaatggatctcggaattattcgcgaaatgattcctggaatggctctcgcaatacg
aacagcaaaagttatacaagagatacacgaactgcgaagaaaaaatattcttcgtactaa
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