KEGG   Labilibaculum antarcticum: ALGA_0060
Entry
ALGA_0060         CDS       T05376                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
mbas  Labilibaculum antarcticum
Pathway
mbas02020  Two-component system
Brite
KEGG Orthology (KO) [BR:mbas00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ALGA_0060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mbas03021]
    ALGA_0060
Transcription machinery [BR:mbas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ALGA_0060
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE Sigma70_ECF CalpD_C PhyR_sigma-like Poxvirus_B22R_C
Other DBs
NCBI-ProteinID: BAX78455
UniProt: A0A1Y1CDP8
LinkDB
Position
complement(78135..78725)
AA seq 196 aa
MVSLSDEVIVLFNKKKESAFELVFNMYYPRLVYFAKEYVSYDDAKNLVQDAFITLWNKKP
EFGSESQLRSYLYLTVKNNCLMHLRHEKVRDSYNNQVAKQQQNQIFQVALENIDTSELIL
NEINAIVDATVEVLPPRCREIFVLSRFEGKKNQEVAEELNISLKSVEAQITKALKIFKKA
LIDYLPLLISFLVIGK
NT seq 591 nt   +upstreamnt  +downstreamnt
atggtttctttgtcagatgaggtaattgttttgtttaataaaaaaaaagaatccgcattt
gaattagttttcaatatgtattatcctcgtttggtgtattttgccaaggaatacgtttct
tatgatgatgcgaaaaatttggtgcaagatgctttcatcacattatggaataagaaacca
gagtttggcagtgaatctcagctacgtagctatctttatcttaccgtgaaaaataattgt
ctgatgcatctaaggcatgagaaagtaagagacagttataataatcaagtagcaaaacaa
caacagaatcaaatttttcaggtagcccttgagaatatcgatacttcggaacttattttg
aatgaaataaacgcaattgttgacgcaactgttgaagtattgccacctcgatgtcgggaa
atatttgtcttaagtcgatttgaagggaaaaaaaatcaagaggttgcggaagaattgaat
atctctcttaaatcggttgaagcccaaattacaaaagctctaaaaatatttaagaaggct
ttgatagactatcttccattacttatttcattcctggtaattggtaaataa

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