Labilibaculum antarcticum: ALGA_0060
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Entry
ALGA_0060 CDS
T05376
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ALGA_0060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbas03021
]
ALGA_0060
Transcription machinery [BR:
mbas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ALGA_0060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
Sigma70_ECF
CalpD_C
PhyR_sigma-like
Poxvirus_B22R_C
Motif
Other DBs
NCBI-ProteinID:
BAX78455
UniProt:
A0A1Y1CDP8
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All DBs
Position
complement(78135..78725)
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AA seq
196 aa
AA seq
DB search
MVSLSDEVIVLFNKKKESAFELVFNMYYPRLVYFAKEYVSYDDAKNLVQDAFITLWNKKP
EFGSESQLRSYLYLTVKNNCLMHLRHEKVRDSYNNQVAKQQQNQIFQVALENIDTSELIL
NEINAIVDATVEVLPPRCREIFVLSRFEGKKNQEVAEELNISLKSVEAQITKALKIFKKA
LIDYLPLLISFLVIGK
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggtttctttgtcagatgaggtaattgttttgtttaataaaaaaaaagaatccgcattt
gaattagttttcaatatgtattatcctcgtttggtgtattttgccaaggaatacgtttct
tatgatgatgcgaaaaatttggtgcaagatgctttcatcacattatggaataagaaacca
gagtttggcagtgaatctcagctacgtagctatctttatcttaccgtgaaaaataattgt
ctgatgcatctaaggcatgagaaagtaagagacagttataataatcaagtagcaaaacaa
caacagaatcaaatttttcaggtagcccttgagaatatcgatacttcggaacttattttg
aatgaaataaacgcaattgttgacgcaactgttgaagtattgccacctcgatgtcgggaa
atatttgtcttaagtcgatttgaagggaaaaaaaatcaagaggttgcggaagaattgaat
atctctcttaaatcggttgaagcccaaattacaaaagctctaaaaatatttaagaaggct
ttgatagactatcttccattacttatttcattcctggtaattggtaaataa
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