Labilibaculum antarcticum: ALGA_0777
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Entry
ALGA_0777 CDS
T05376
Name
(GenBank) oligopeptidase B
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALGA_0777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbas03019
]
ALGA_0777
03400 DNA repair and recombination proteins [BR:
mbas03400
]
ALGA_0777
Enzymes [BR:
mbas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALGA_0777
Messenger RNA biogenesis [BR:
mbas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALGA_0777
DNA repair and recombination proteins [BR:
mbas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ALGA_0777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HTH_40
HRDC
RecQ_Zn_bind
ResIII
GerE
Terminase_5
HTH_11
Motif
Other DBs
NCBI-ProteinID:
BAX79166
UniProt:
A0A1Y1CFK4
LinkDB
All DBs
Position
complement(1081661..1083775)
Genome browser
AA seq
704 aa
AA seq
DB search
MTTAKRALKKYFGYDHFRPLQEEVIKSVLQGEDALVIMPTGGGKSICYQIPALIMDGVTV
VVSPLIALMKDQVEGLHANGVDAAFLNSSQSSQQQADVMERINEGKLKLLYVSPEKLVSH
DFYYLLLQLKVNLFAIDEAHCISVWGHDFRPEYAKMAYLKKQFPHVPVIALTATADNLTQ
KDIVNQLGLADPKKFNSSFDRPNLSLNVAPGKDKFKTILGFLRQRPHQAGIIYCLSRKAT
EGLAEKLRNAGVNASYYHAGLPTEERARRQEDFINDEVPIICATIAFGMGIDKSNVRWVI
HYNLPRNIESYYQEIGRAGRDGLKADTLLFYSFSDVIVHRRFIEQSAQKEVAHAKLERIQ
QFCDAQICRRKILLNYFGEHLEENCNNCDVCKKPPRLFDGTIIAQKAFSAIVRLKEKVAS
GTLIDVIRGSSRQEILSRGYNKIKTYGVGKDIAYQDWQQYMLQLLNLGYISVAYDDGNAL
KLTEQGREVLFGERLVNLVRLATMKSDPEIKPILKTGKQEAREGLFEALRKLRLQIAREE
NIPPYLVFSDASLLEMAQEEPASEFEFKMISGVGVRKYQLYGDLFINEIVVFSQNKNKEA
KKSGESFYQTYEYYKQGFSVEEIASIRKINPVTIYSHLASLYEKGADIDLTEYLNPSEFE
LIENAYRSLNETDNVKDLYMFMKEEIEYYKIRLGISYLKVLSSS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagccaagcgcgcattaaaaaaatattttggatatgaccatttccggcctttg
caggaagaggttatcaaatccgtacttcagggtgaagatgccttggttattatgcctacg
ggtggcggtaaatccatatgttatcaaataccagcattaataatggatggcgtaactgtg
gttgtttcaccactgattgccctcatgaaagatcaggtggaaggtttgcatgccaatggt
gtggatgcggcttttttgaacagctcgcagtcttcccagcaacaggctgatgtcatggag
agaatcaacgaaggaaagttaaagcttctgtatgtttctcctgagaaattagttagtcac
gatttttattacctgcttttacagctaaaggtgaatttatttgccattgatgaggcacat
tgtatctctgtttggggacacgattttagaccggagtatgcaaaaatggcttatttgaaa
aagcaatttcctcatgttcctgtaattgctttaaccgctacggcggataatttaacacag
aaagatattgttaatcaattgggtcttgcagatcctaagaaattcaattcttcattcgac
cgacccaatttaagcttgaacgtggctcccggtaaggataaatttaaaaccattcttggt
tttctgcgtcaacggccacatcaggcaggaattatttattgcttaagcagaaaggcgacc
gagggtttagccgaaaaacttaggaatgcaggagtgaatgcctcctattatcatgcgggt
ttgccaaccgaagaaagagcccggcgacaagaagattttattaatgatgaagtgccaata
atatgcgctaccattgcttttggaatgggaatagacaagtcgaatgtgcgttgggtaatc
cattacaatcttccgcgaaacatagagtcttactatcaggagattggtcgtgccggccga
gatggattaaaggccgatacacttttgttttatagtttctcagatgtaattgttcatcgt
agatttattgagcagtcagcacaaaaagaggttgcacatgccaaattggaacgaatccag
caattttgtgatgctcaaatatgccggagaaagattttactaaattattttggtgaacat
ttggaagaaaattgcaacaattgtgacgtatgtaaaaagccacctcgtctattcgatgga
accataatcgcccaaaaggcattttcggcaattgttcgattgaaagaaaaggttgcatcg
ggaacattaattgatgtcattcggggctcttcccgtcaggaaattttaagccgaggatat
aataaaatcaaaacctatggggtcggaaaagatattgcctatcaggattggcaacaatac
atgttgcagcttttaaacttaggttacatttctgttgcctatgatgatggaaatgcgctg
aagttgaccgagcaggggagagaagtgctttttggggaaagacttgtgaatttggttcgt
ttggctaccatgaagtccgatcctgaaataaagccaattttaaagacaggcaagcaggag
gcaagagagggattattcgaagcattgcgaaaattacgtttgcagatagcccgtgaagag
aatattcctccatatttggtattctccgatgctagtctattagaaatggctcaggaagaa
cctgctagtgagttcgaattcaaaatgatatcgggcgtgggtgttcggaagtatcaattg
tatggcgatttgtttattaatgagattgtagtgtttagtcagaataagaataaggaagcc
aaaaagagtggtgaatctttttatcagacttatgaatattacaagcaaggtttctctgtg
gaagaaattgcaagtattcgaaaaatcaatccagttaccatatattctcatttggcttct
ttgtatgaaaagggcgctgatattgatttgacagagtatttgaatccttcagaatttgaa
ctgattgaaaatgcttaccgttctttaaatgagactgataatgttaaggatctctatatg
ttcatgaaagaagaaatagaatattataaaattcgtcttggcatctcctatctaaaagtg
ctttcatccagttaa
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