KEGG   Labilibaculum antarcticum: ALGA_1611
Entry
ALGA_1611         CDS       T05376                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
mbas  Labilibaculum antarcticum
Pathway
mbas02020  Two-component system
Brite
KEGG Orthology (KO) [BR:mbas00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ALGA_1611
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mbas03021]
    ALGA_1611
Transcription machinery [BR:mbas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ALGA_1611
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE Sigma70_ECF HTH_23 PF0610-like_N HTH_24 HTH_40 UPF0122 HTH_10 HTH_28 HTH_5 HTH_38 PhyR_sigma2
Other DBs
NCBI-ProteinID: BAX79987
UniProt: A0A1Y1CI06
LinkDB
Position
complement(2100471..2101049)
AA seq 192 aa
MQNIEQSYYKRLKGGDKYVIDEIYNRFHFKIFRFSFAFLKNEEDAYDIVQEVFIKFWEKR
SSLKDDTNLEAFLFTIAKNTVLSVFRKRSTEQKYLDYLQNTVNSNSSGTKEQVDYVFLKG
QYDKLVPELPPKRRAIFLLSREKGLSNKEIAELKGISEKTVEDHITKSLAFLRKHILLFG
IWGELFYFVFVD
NT seq 579 nt   +upstreamnt  +downstreamnt
atgcagaatatcgaacaatcatattataagagactaaaaggtggagataaatatgtaatt
gatgaaatttacaataggtttcattttaaaatttttcgtttttcgtttgcttttttgaaa
aatgaagaggatgcttacgatattgtccaagaagtgtttattaaattttgggagaagcgt
tcttccttaaaggacgatactaatctcgaagcatttctttttactattgcaaaaaacaca
gtgctgtctgtatttcgaaaacgaagcacagagcagaaatatttagactatttacagaat
acggttaatagtaatagttctggaacaaaagagcaagttgattatgtctttttaaaggga
cagtatgataagctagtgccagaactgcctcccaaaagaagagcaatttttttattgagt
cgtgagaaaggtctttcaaataaagaaattgctgaactaaaaggaatatctgaaaaaact
gttgaagatcatattacaaaatctcttgcttttcttcgaaaacacatcttgcttttcggt
atatggggagagttattttattttgtttttgtcgattga

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