Labilibaculum antarcticum: ALGA_1611
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Entry
ALGA_1611 CDS
T05376
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ALGA_1611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbas03021
]
ALGA_1611
Transcription machinery [BR:
mbas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ALGA_1611
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
Sigma70_ECF
HTH_23
PF0610-like_N
HTH_24
HTH_40
UPF0122
HTH_10
HTH_28
HTH_5
HTH_38
PhyR_sigma2
Motif
Other DBs
NCBI-ProteinID:
BAX79987
UniProt:
A0A1Y1CI06
LinkDB
All DBs
Position
complement(2100471..2101049)
Genome browser
AA seq
192 aa
AA seq
DB search
MQNIEQSYYKRLKGGDKYVIDEIYNRFHFKIFRFSFAFLKNEEDAYDIVQEVFIKFWEKR
SSLKDDTNLEAFLFTIAKNTVLSVFRKRSTEQKYLDYLQNTVNSNSSGTKEQVDYVFLKG
QYDKLVPELPPKRRAIFLLSREKGLSNKEIAELKGISEKTVEDHITKSLAFLRKHILLFG
IWGELFYFVFVD
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatatcgaacaatcatattataagagactaaaaggtggagataaatatgtaatt
gatgaaatttacaataggtttcattttaaaatttttcgtttttcgtttgcttttttgaaa
aatgaagaggatgcttacgatattgtccaagaagtgtttattaaattttgggagaagcgt
tcttccttaaaggacgatactaatctcgaagcatttctttttactattgcaaaaaacaca
gtgctgtctgtatttcgaaaacgaagcacagagcagaaatatttagactatttacagaat
acggttaatagtaatagttctggaacaaaagagcaagttgattatgtctttttaaaggga
cagtatgataagctagtgccagaactgcctcccaaaagaagagcaatttttttattgagt
cgtgagaaaggtctttcaaataaagaaattgctgaactaaaaggaatatctgaaaaaact
gttgaagatcatattacaaaatctcttgcttttcttcgaaaacacatcttgcttttcggt
atatggggagagttattttattttgtttttgtcgattga
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