Labilibaculum antarcticum: ALGA_2327
Help
Entry
ALGA_2327 CDS
T05376
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALGA_2327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbas03019
]
ALGA_2327
03016 Transfer RNA biogenesis [BR:
mbas03016
]
ALGA_2327
Enzymes [BR:
mbas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ALGA_2327
Messenger RNA biogenesis [BR:
mbas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ALGA_2327
Transfer RNA biogenesis [BR:
mbas03016
]
Prokaryotic type
tRNA degradation factors
ALGA_2327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
BAX80654
UniProt:
A0A1Y1CK06
LinkDB
All DBs
Position
3003113..3005245
Genome browser
AA seq
710 aa
AA seq
DB search
MKVIEKIIDLGDGRSITIETGKLAKQADGAVVVKMGKTMLLATVVSSKDAKADVDFMPLS
VEYKEKYSALGRFPGGFMKREGRPSDYEILICRLVDRALRPLFPADYHAETFVVINLISV
DANDMPDALAGLAASAALAVSDVPFAEPISEVRVARIDGKMMINPGREELATADLDMIIA
ATMDNIMMVEGEMSEVSEAEMLEAIKFGHEAIKVQCQVQIELAELTGKTVKREYCHETND
EELRQLIVDKTYAKVLAVARLQNPNKHERSASFAAVKEEFIAEYSEGKEASDINKSLIGR
YYHDVEKDAVREMVLEDRVRLDGRKTNEIRPIWSEVDYLPGAHGSAIFTRGETQSLTSVT
LGTKLDEKLVDDVLYRGKEKFVLHYNFPSFSTGDARPNRGISRREVGHGNLAFRALKGMI
PKDSPYAIRVVSDILESNGSSSMATVCAGTLALMDAGIKIKNPVTGIAMGLISTKGAEKY
AVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLPYEVLAQALDQAREGRLHILG
KIEETIAAPREDLKPHAPRIVSMEIPKEMIGAVIGPGGKIIQEIQESTGAVLVIEEIDNK
GVIDISANNKEAIDAALARIKGIVAIPEVGEIYKGKVKSIVAFGAFVEVLPGKDGLLHIS
EIEHRRLNTVDEVLKEGQIIEVKLIEVDAKSGKLKLSRKALLPKPEKDEK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgattgaaaaaataattgatttaggtgatggaaggtccatcacaattgaaaca
gggaagttagcgaaacaggctgatggagctgttgtagttaaaatgggtaagaccatgttg
ttggctactgttgtgtcttcaaaagatgcaaaagctgatgttgattttatgcctttatcg
gtagaatacaaggagaaatatagtgctttaggcagattccctggaggtttcatgaaacgt
gaaggtagaccttcggattatgaaattcttatttgtcgtcttgtggatcgtgctctacgt
ccattattccctgcagattaccacgcagaaacttttgttgtaattaaccttatttcggtt
gatgcaaatgatatgcctgacgctcttgctggtttagccgcatctgcagcgcttgctgtt
tctgatgtgccgtttgcagaaccaatttctgaagttcgtgttgcccgaattgatggcaaa
atgatgattaatccaggtcgtgaagaattagctactgctgatcttgatatgattattgcg
gctaccatggataacatcatgatggttgaaggtgaaatgtctgaagtttctgaagctgaa
atgttagaagctatcaaattcggtcatgaagctattaaagttcaatgtcaggttcaaatt
gagttggctgaactaacaggtaaaactgtaaaaagagaatattgtcacgaaactaacgat
gaagaacttcgtcagttaatcgtggataaaacatatgctaaggtattagcagttgcaaga
ttacagaatccaaataagcacgaacgttctgcttcatttgctgctgtaaaagaagaattt
attgctgaatattcagaaggcaaagaggcttcagatattaacaaatctttgattggtcgt
tactatcacgatgtagaaaaagatgccgttagagaaatggttttagaagatcgtgtacgt
ttagatggtcgtaaaaccaacgaaattcgcccaatttggtctgaagttgattatttacca
ggtgctcatggttctgcaatatttaccagaggtgaaactcaatcattaacttcggttact
ttaggtactaagttggatgagaaattggtagatgatgtattgtacagaggaaaagagaaa
tttgtacttcattataatttcccttcattctcaactggagatgcccgtccaaaccgtggt
attagccgtagagaagtaggtcacggtaatttggcttttagagcgttaaaaggaatgatt
cctaaagattctccatatgctattcgtgttgtttctgatattttagaatctaatggttca
tcatcaatggctactgtatgtgcaggaacattggcgttaatggatgcaggtattaaaatt
aaaaatccggtaacaggtattgctatgggattgatctctaccaaaggggctgagaaatat
gctgtattgtctgatattcttggtgatgaagatcatttaggtgatatggactttaaagta
actggtactaaagatggtattacagcgactcaaatggatattaaagttgacggacttcct
tatgaagtgttagctcaagcattggatcaggcaagagaaggtcgtcttcatattttaggt
aaaatagaagagacaattgctgcaccaagagaagacttgaaacctcacgctcctcgtatt
gtgtcaatggaaattccaaaagagatgattggtgcggtaatcggaccaggtggaaaaatt
attcaagaaattcaagaatcaacaggtgctgttttggttattgaggaaattgacaataaa
ggtgttatcgatatttctgctaataataaagaagcaattgatgcggctttagctcgtatt
aagggtattgtagctattcctgaagtgggagaaatctataaagggaaagtgaaatcaata
gttgcttttggtgcttttgttgaagttcttccaggaaaagatggtttacttcatatttcg
gaaatagaacacagaagattaaatacagttgatgaagttttgaaagaaggtcagattatt
gaagtgaaacttattgaagttgatgctaaatctggtaaattaaaactttctagaaaagct
ttgttaccaaagcctgagaaagacgaaaaatag
DBGET
integrated database retrieval system
