Labilibaculum antarcticum: ALGA_2536
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Entry
ALGA_2536 CDS
T05376
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALGA_2536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbas03021
]
ALGA_2536
03019 Messenger RNA biogenesis [BR:
mbas03019
]
ALGA_2536
Transcription machinery [BR:
mbas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ALGA_2536
Messenger RNA biogenesis [BR:
mbas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ALGA_2536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BAX80858
UniProt:
A0A1Y1CKB7
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All DBs
Position
3278100..3279947
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AA seq
615 aa
AA seq
DB search
MYDILELNKKLVPELREIAKELNVKKIESFKKQDLIYRILDQQAIVASERKTPEKKTPLK
RTKSSEGDNKTEESRSRSILPKRRKSEQPAKDALDAVAPQEENTTQKEAPRKPRRDKRQV
VEKVEGSSIEEKKEEQSDVVASVSDSVTDETAQTGERPVRPPRPPRPPRPPRSPRSERQE
KTEGQAKVEGEAKAELEVKSEGQEVSTKIEKSERSEKSEKPEGQESPTRKRFEKREKEKL
FEFDGIINNSGVLEIMPDGYGFLRSSDYNYLNSPDDIYVSQSQIKLFGLKTGDTVNGTIR
PPKEGEKYFPLIKVSKINGRLPEVIRDRVPFDHLTPLFPNEKFNLTGKGMNTMSTRLVDM
FAPIGKGQRGLIVAQPKTGKTVLLKEIANAIASNNPEAYMIILLIDERPEEVTDMARSVN
AEVISSTFDEPAERHVRVANIVLEKAKRMVECGHDVVILLDSITRLARAYNTVSPASGKV
LSGGVDANALHKPKRFFGAARNIENGGSLTILATALTDTGSKMDDVIFEEFKGTGNMELQ
LDRKLSNKRIFPAVDITASSTRRDDLLLDPNQLNRIWILRNYLTDMNSIEAMQFLQDRLR
KTKSNEEFLISMNDK
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatattcttgaattaaacaagaaacttgtgcctgaattacgagaaatcgctaaa
gaactcaacgttaaaaaaattgagtcttttaagaaacaggatttaatttacagaatcctt
gatcaacaggcaattgtagcttctgaaaggaaaacaccagaaaaaaagactccgctaaaa
agaactaagagttctgaaggagataataagactgaggaaagtcgatccaggtcgattttg
ccaaaaagaagaaagtcagagcaaccagctaaagatgctttagatgctgtggctcctcaa
gaagaaaatacaacacaaaaggaagctcctagaaaacctagaagagataaaaggcaggtt
gtagaaaaagtggaaggttcttcaatagaagagaagaaagaggagcaatcagatgttgtg
gcttcagtttctgattctgtgacagatgaaactgcacagacaggcgaaagacctgttaga
ccaccaagaccaccaagaccaccaagaccaccaagatcgccaagatcagaacgtcaggag
aagactgaaggacaggcgaaggttgaaggtgaggctaaagctgagttggaggttaagtct
gaagggcaagaagtttcaactaaaattgaaaaatcagaaagatctgagaaatcagaaaaa
cctgaaggacaggaaagcccaactagaaaacgttttgaaaaacgtgagaaagagaaatta
tttgaatttgatggaataattaacaattcaggtgttttggaaatcatgcctgatggttat
ggattccttcgttcttcggattataattatttaaattctcctgatgatatatatgtatca
cagtcgcaaatcaaattgtttggtttgaaaactggtgatacggttaatggaacgattcgt
cctccaaaagaaggtgagaaatattttccattaattaaggtctcgaaaattaacggcaga
ttacctgaggtaattcgggatcgtgtgccttttgatcatttgactcctttatttcctaat
gagaaatttaacttgactggaaaaggaatgaacactatgtcaacacgtcttgttgatatg
tttgctcctattgggaaaggacaacgaggacttattgttgcgcagccaaaaacaggtaaa
actgttcttttgaaagaaattgccaatgctattgcttcaaacaatcctgaagcttacatg
atcattttattgattgatgagcgtcctgaagaggttacagatatggctcgtagcgtaaat
gcagaggttatttcatctacttttgatgagccggctgagcgccatgtacgtgttgctaat
atcgttttggagaaagctaaacgtatggtagagtgtggtcatgatgttgtaattctattg
gattcaataactcgattagctcgtgcctacaatactgtttctcctgcgtcaggtaaagtt
ctttctggaggtgtggatgcaaatgcattgcacaaaccaaaacgtttctttggtgcagca
agaaatatcgagaatggtggatcgcttactattttagcgacagcattgactgatacgggt
tctaaaatggatgatgttatctttgaagaatttaaaggtactggtaatatggagcttcaa
ttagatcgtaagttatctaacaagcgcatcttcccagcagttgatattacggcatcaagt
actcgtcgtgatgatctgcttcttgatccaaatcaattgaatcgtatctggattcttcga
aattatctaacagatatgaactcgattgaggcaatgcaatttttgcaagatcgtttgaga
aaaacaaaatcgaacgaagaattcttaatctcaatgaacgataagtaa
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