Labilibaculum antarcticum: ALGA_2861
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Entry
ALGA_2861 CDS
T05376
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALGA_2861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbas03019
]
ALGA_2861
Enzymes [BR:
mbas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALGA_2861
Messenger RNA biogenesis [BR:
mbas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALGA_2861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAX81166
UniProt:
A0A1Y1CL95
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All DBs
Position
3678823..3680184
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AA seq
453 aa
AA seq
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MTFDKLEIIEPILKAIGAKGYTHPTPIQEKSIPILLRKRDLLGCAQTGTGKTAAFAIPIL
QHIFNDATPEKGRRRIKALVVTPTRELAIQIKDNFSEYGKYTGIKNTVIFGGVKQGAQTK
ALNAGVDVLVATPGRLLDLIGQGYVSLRDVKYFVLDEADQMLDMGFIHDIRKVIDMLPKR
RQSLFFSATMPQSIVTLAGKILGNPDKVTIKPEQTTAEKVGQSLYYVSKKAKPKLLAFLL
KTEDVESTLVFSRTKHGADKVVKGLIKVGIQAEAIHGNKSQNARQLALSNFKAGSTKVLV
ATDIAARGIDVSELSLVVNYDLPNIPETYVHRIGRTGRASASGNAISFCDTEERPYLKDI
QKLIKQDIDVVKDHPFLPGGVEDNAVEDVKPDKRRQQPRSSKSSNSSRSSNPSRSSNSSK
SSRTPNSSNSSKPSYSGNKEWRRGNTASKKRTE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgataaattagagattatagagcccattctaaaagcgattggggctaaaggt
tatacacatcccactccaattcaggagaaatcaataccaattttacttcgaaaaagagat
ttattaggttgtgcacaaacaggaactggtaagacagcagcgtttgcaattccaattttg
cagcacatttttaatgatgcaacaccggaaaaaggtcgtcgcagaattaaagctcttgta
gtaactccaacacgtgagttggctattcagattaaggataatttttcagagtatggaaag
tatacaggaattaaaaatacagtaatttttggaggggtaaaacagggcgctcaaaccaag
gctttaaatgctggcgttgatgtgttggttgcgactccaggtagattgctggacttaata
gggcaaggctatgtctcattaagagacgttaaatatttcgttttagatgaagcagatcag
atgctcgatatgggatttatccacgacattagaaaagtcatcgatatgttgcctaaacga
agacaatcattgttcttttctgcaacaatgccacaaagtattgtaactcttgcaggtaaa
attttaggtaatcctgataaagtaacaataaaaccagagcagactacagctgagaaggtt
ggacaatctctttactatgtgagcaaaaaagcaaaaccaaaattgcttgcttttctgttg
aaaacggaagatgtagaatctacattggtgttttcgagaacaaaacacggagctgataag
gttgttaaaggattgattaaagtaggtattcaggcggaagcaattcatgggaataaatct
cagaatgcaagacagcttgctttaagtaattttaaagctggctcaacgaaagtgcttgtt
gctacagacatagcggcacgaggaattgatgtttcagaattgtcattggtggtaaattac
gatttgccaaatattccagaaacttacgttcatcgtatcggaagaactggtcgtgcaagt
gccagtggtaatgccatttctttttgtgatacagaagaaagaccatatttgaaggatatc
cagaagttaattaagcaagatattgacgtggttaaggatcatccatttcttccgggtgga
gttgaggataatgcagttgaggatgtaaaaccagataaaagaaggcaacagcctaggtca
tctaaatcttcaaattcttcaagatcgtctaatccttcaagatcatcgaattcttcaaag
tcttcaagaacgccaaattcttcgaattcttcgaaaccgtcatattcgggaaacaaagaa
tggagacgtggtaatactgcttccaagaaacgaactgagtaa
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