Labilibaculum antarcticum: ALGA_3255
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Entry
ALGA_3255 CDS
T05376
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALGA_3255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbas03019
]
ALGA_3255
03009 Ribosome biogenesis [BR:
mbas03009
]
ALGA_3255
Enzymes [BR:
mbas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALGA_3255
Messenger RNA biogenesis [BR:
mbas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALGA_3255
Ribosome biogenesis [BR:
mbas03009
]
Prokaryotic type
rRNA helicases
ALGA_3255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAX81555
UniProt:
A0A1Y1CMH4
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All DBs
Position
4193787..4195583
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AA seq
598 aa
AA seq
DB search
MNSFENLGLSEAILGAIKELGFENPTPIQEKAIPVLLEGRSDFVGLAQTGTGKTAAYGLP
LLELIEQDQKLPQALILSPTRELGIQIADDLRLFSKNILNLNVVNVYGGASIDDQIRKLR
RGAHVIVATPGRLLDMIRRKAVDLSKIEYLILDEADEMLNMGFKEDIDVILSSTSENKLT
WLFSATMPNEVRRIAKNYMTDPVEVTVGKANTSNVNISHQYYLLNNRDRYNVLKRVVDYY
PEIFGIVFCRTRKETQEVAELLMKDGYAADALHGDLSQVQRDKVMRSFKNKTIQLLVATD
VAARGIDIDDLTHVIHYNLPDELEYYTHRSGRTARAGRSGISIALITPRDERKVRDLAKK
LNVEFAQLKVPGGEEVCERQLLHYMNRIKEVNIEDNNIGAHFEAINNELSELSREDIIKK
FVSLEFNRFMDFYKNTPDLNMKSSTQKRAQKTHESVDSNEDRMFINIGIKDGIDVPRLLT
LIHKQCGVRGKNIGRVDLKGVFSFFDVEKEFTNEIVKGFAGAVVGDRAVRIEVSGDRPSS
GGGESHRKGRSSRGSDRGGSDRSRGGSDRGGSKRESFKDRRRKTSDSPRYSERKKREA
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatttgaaaatcttggcctttctgaggctatcctaggagcaatcaaagagtta
ggcttcgaaaatccgacaccaatccaagaaaaggcaattcctgttcttttggaaggtaga
tctgattttgttggtttggctcaaactggtactgggaaaacggcggcttatggtttacct
ttgctcgaactaatcgagcaagaccaaaaattaccacaagctttgattctgtcccctact
agggaattgggaatccaaattgcagacgacttaagactattttctaaaaatattttgaat
cttaatgtggtaaacgtttatggcggtgctagcattgatgatcaaatccggaaattaaga
agaggagcacatgttattgttgcaactcctggccgtctacttgatatgattagacgtaaa
gcagtagatctatctaaaatcgaatatttaattcttgatgaagcagatgaaatgcttaat
atgggatttaaagaggatattgacgtaattctatcttctacttctgaaaataaattgacc
tggttgttttctgcaactatgcctaatgaagttcgaagaattgctaaaaactacatgaca
gatcctgttgaagttactgtagggaaagcgaacacttcgaatgtaaatatttcgcatcag
tattatttattaaataatcgtgatcgttacaacgttctgaaaagagtcgttgattattac
ccagaaatattcggaattgttttttgtcgtacccgaaaggaaacgcaggaagtagccgaa
ttattaatgaaagatggatatgctgcagatgctttgcatggtgacctttctcaggttcag
cgtgataaagtaatgagaagttttaaaaataaaacaattcaacttttagtggctacagat
gttgctgctcgtggaattgatattgatgaccttactcacgtaattcattacaacttgcct
gatgagttggaatattatacgcacagaagtggtcgtacagcaagagcaggtagatctggt
atttctattgctttgattactcctcgcgatgagagaaaagtaagagatcttgccaaaaaa
ttaaatgttgaatttgctcaattgaaggttcctggtggtgaagaagtttgtgaaagacaa
ttgcttcattatatgaaccgtatcaaggaggtaaatattgaagataataatatcggagcc
cattttgaagccataaacaacgaattaagcgaattaagcagagaggatatcattaagaaa
tttgtatctcttgagttcaatcgttttatggatttctataaaaatactcctgatttgaat
atgaaatcatctactcaaaaaagagctcaaaaaactcatgagagtgttgatagcaatgaa
gatcgtatgtttattaatattgggataaaagatggaattgatgttcctcgtttattgact
ttaattcacaagcaatgtggagttagaggaaagaatattggtagagtcgatttaaaggga
gtgttttctttctttgatgtggaaaaagaatttactaatgagattgtaaaaggttttgct
ggtgcagttgtgggagacagagctgtgcgtattgaagtgtcaggagatcgcccatcgagt
ggtggtggcgaaagtcacagaaaaggtagatcatctagaggatctgatagaggtggatct
gatagaagcagaggcggatctgatcgcggaggaagcaaaagagaatcatttaaagataga
cgaagaaagactagtgatagtccaagatactcggaaagaaaaaagagggaagcttag
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