Labilibaculum antarcticum: ALGA_4075
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Entry
ALGA_4075 CDS
T05376
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ALGA_4075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbas03400
]
ALGA_4075
Enzymes [BR:
mbas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ALGA_4075
DNA repair and recombination proteins [BR:
mbas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ALGA_4075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_30
Helicase_RecD
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAX82366
UniProt:
A0A1Y1CPK3
LinkDB
All DBs
Position
complement(5222952..5226233)
Genome browser
AA seq
1093 aa
AA seq
DB search
MTELSKQEFKVDSVELSGSNLIEASAGTGKTFSIGILVLRLILEKNLNLPQILMVTFTKA
AVAELESRIRKFIREAQAYARQTGTCDDMIARIVDSSIAEIGREEAVNRLRKAKLNLDET
VIFTIHSFCQKTLTEFAFETGQLFSAEVIENSAAIVNTAINEYWRQKITILESSHLQLLV
SDKISREDLATVVSKALSGKHFVYDKDLDLAEEFKNYFTKREKIDEAEQGFDQLFETSNE
RDFTKIKQQNPNRTFEPLSNDSVKFRAKLIEKKGTGYVSKLFPTLLDSALNIQESIEEAK
ESLKDIKCYLYGEAIADTKDYIQKRKQDLNVFTYDDLIQNLAGAVEKDDSGLLKGELQKK
YKAVFIDEFQDTDKMQYDIFNGLFGQNNILFYIGDPKQSIYGFRGADIDTYKFAASQVQN
SYTMSHNFRSTPNMVAALNSFFKVADNAFCDDKIRYEQVEAGTSLSEMQYQDEPVKNMAQ
MFVKNNQEIAPAVASEIYHLLSSDYKLEDRKVKPSDIVVLVRTKNQGAEVKAALSKMKIP
AVRIDDSKVLQSEEAILISYVLQACLNPDKANINRALLNRLTNSTKADLLTLDDEKELKN
FREIKESWLKSGIYASLTLFLKKYSVGSNLLNSADGERALTNLLQIIELLHKAEVDRQLL
PAELVSYLQKLIAGAEEEGDEYVQRMESDDDAVKIVTIHSSKGLAYNIVFAPYLDLKDDF
NWRRAFVEYKDPENQKYCISQFKTEREIGLYQEQTEQENRRLIYVCLTRTVYKAYVYTTK
RGSVEAFLSDPSNCPYIEKQDVKDLSGERYSNEEEKVLRKARKFEGNIQVSWQMLSFSAL
NKHHQTYPKTQHDLENDYDTFVFEQLTKGNVAGNFLHELFENADFTQNSFHSIIKRVGKG
YPSVYKEEQLENYNQLMLEVLQANLSEEKPWCLQQTDKNKMISEMEFFFDINAFTPKEIS
VLCEKARVDDSRTLEGFMTGFIDLFFEHDGKYYILDWKSNFLGNSLTDYSPERLDEVMTD
NNYHLQYLIYTIAVKRYLKMRLPNFNYERDFGGVYYLFLRGCRAGGNTGVFYAKPNKEKI
EAMDDLFLAPSVY
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgacagagctaagcaaacaagagtttaaggttgatagtgttgaactaagcgggagtaat
ttaattgaagccagtgctggaaccggtaagaccttttccattgggatattagtcttgcgc
ttgattttggaaaaaaacttaaatctacctcagatactaatggtaacatttaccaaagca
gcggtggctgaattagagtctcgcattcgaaaatttattcgtgaggcacaagcttatgca
cgacaaacaggaacgtgcgatgacatgattgctcgaatcgtagatagcagcattgccgaa
ataggtcgggaagaagcggtgaatcgtcttcgaaaggccaaactgaacctggatgaaacg
gttattttcaccatacacagtttttgtcagaaaacactaactgaatttgcttttgaaaca
ggacaacttttctctgctgaggtaatcgagaatagtgcggccattgtcaataccgccatt
aatgaatattggcgacaaaaaataacaatccttgaatcctctcatcttcaattacttgtg
agtgataaaatctcgagagaagatttggccactgtggtgtcgaaagcccttagcgggaaa
cattttgtgtacgacaaagacttggatttagcagaggaatttaaaaattactttacaaaa
agagaaaaaattgatgaggccgaacaggggtttgatcaattgtttgaaacttccaatgag
cgggattttacgaaaataaagcaacaaaatccgaacaggacatttgagccactttccaat
gattctgtgaaattcagagcgaaactgatcgagaaaaagggaacaggatatgtgagtaaa
ctatttccaactcttctcgattcagctcttaacatacaggaaagtatagaagaagccaaa
gaatcattgaaagacatcaagtgctatttgtatggagaagccatcgccgacacaaaagat
tacattcaaaaacggaaacaggatttgaatgtgttcacctatgatgatttaattcaaaat
ttagcgggtgcagtcgaaaaggacgattcaggccttctgaaaggagaattgcaaaagaaa
tacaaagctgtttttatcgatgaatttcaggataccgataaaatgcagtacgatatcttt
aacggtctctttggtcagaataatattctcttttatatcggagatcccaaacagtcgatt
tacggatttagaggtgccgatattgacacctacaaatttgcagcttcccaggtgcagaac
tcatacaccatgagtcataactttcgttcaacaccgaatatggtcgcggccctcaatagc
ttttttaaggtggcagacaatgctttttgtgacgataaaatcagatatgagcaggtggaa
gcaggaacttccttgtcggagatgcaatatcaagatgagccggtaaaaaacatggctcag
atgtttgtgaagaacaatcaggaaatcgctccggctgtcgcttctgagatctatcactta
ttgagctccgattacaagcttgaagatagaaaggtgaagccatccgatattgtggttttg
gttcgcactaaaaatcagggggcagaggtgaaggcagccctctcaaaaatgaaaattcct
gcggtacgtatcgatgacagcaaggtattgcaatcggaagaagccatattgatctcttac
gtcttgcaagcttgtttaaacccagataaggcaaatatcaaccgagctttgctaaatcgt
ttaacaaacagtacaaaagctgatcttctgactttagatgatgaaaaagaattgaagaac
tttagagaaataaaagaatcctggttaaaatcgggaatctatgcttctttaactctcttc
ctaaaaaaatattcggttgggtctaacttgcttaattcggcagatggagaacgggccctc
acaaatctgctccaaattatcgaattgcttcacaaagcagaagttgacaggcaattgttg
cccgcagaactagtatcatatctgcaaaagctaattgccggagccgaagaagaaggcgat
gaatatgtgcaacgcatggagagtgacgatgatgccgtgaaaattgtaaccatacattcc
agtaaaggtttggcctacaacattgtttttgctccctatctggatttaaaagatgatttt
aattggagaagagcttttgtagagtacaaagatcctgagaatcaaaaatactgcatctct
caatttaaaacagagagagaaataggcttgtatcaagagcaaaccgaacaggaaaatcgc
cgattaatttatgtttgccttacccgtacggtttataaagcttatgtgtataccacaaag
cgtggaagtgttgaggcttttctttccgacccatccaattgtccttatatcgaaaaacag
gacgtaaaagatctatcgggtgaaagatatagcaatgaggaagaaaaagtgcttcgtaaa
gccaggaaatttgaggggaacatacaagtctcctggcaaatgctgagtttttcggccttg
aacaagcaccaccagacttatcccaaaacacaacacgatttggaaaatgactacgacaca
tttgtatttgagcagttaacgaaggggaatgtagccggaaattttctgcatgaattattc
gaaaatgcagatttcacccaaaatagcttccattcgataattaaaagagtggggaaaggc
tatccatcggtttataaggaagagcaactggagaattacaaccagttgatgttagaagta
ttgcaagccaatttatcggaagaaaaaccgtggtgtctgcaacaaacggacaaaaataaa
atgatttcggagatggaattcttcttcgatatcaatgcatttacgccgaaagaaattagt
gtgctatgcgaaaaggcacgtgttgatgattcccgaacactggaaggttttatgaccggc
tttatcgatctgttttttgaacacgatggtaaatattatatcctcgactggaaatcaaac
ttccttggcaattccttaaccgattattctcccgagcgactagacgaggtgatgacagat
aacaattaccatctgcaatacctgatctatacgattgcagtaaagcgttacctgaaaatg
cgtttgccaaattttaattacgagcgcgattttggcggtgtgtattatctgtttttgcga
gggtgcagggcaggaggcaataccggagtgttttatgccaagccaaataaagaaaagata
gaagcaatggatgatttatttcttgctccgtccgtttattaa
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