Labilibaculum antarcticum: ALGA_4117
Help
Entry
ALGA_4117 CDS
T05376
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ALGA_4117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbas03021
]
ALGA_4117
Transcription machinery [BR:
mbas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ALGA_4117
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
GerE
HTH_23
HTH_11
PhyR_sigma2
HTH_24
HTH_38
HTH_40
HTH_16
HTH_29
HTH_TnsB
Motif
Other DBs
NCBI-ProteinID:
BAX82408
UniProt:
A0A1Y1CPP7
LinkDB
All DBs
Position
complement(5300475..5301062)
Genome browser
AA seq
195 aa
AA seq
DB search
MTTNTDIKDQTLVIQLKDGSQLAFKQLFDRYTPRIYRFAISYLKSDADAEELVQDVFLKL
WEKRETLDESQNIRAYIFKIAINSIYNLSKRKNYKQVYNEFVKNNFTLDNEFTWNDVVYN
ELVDSLNLHIDKMPAQRRDIFLMSRKDGLSNQEIAKNLNISLRTVENQIYRSVSYLREQL
KPNSVFLLLLFFLNS
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
ttgactacaaacactgacattaaagatcaaaccctagtgattcaattaaaagatggatca
cagcttgcctttaagcaactatttgatcgatatacacctagaatatatcgttttgccata
tcttatcttaaatcagatgcagatgcggaagaattagttcaagatgttttcctaaagctt
tgggaaaaaagagaaactcttgatgaatctcagaatattcgcgcttacatttttaaaata
gcgattaatagcatttataatttatccaaaaggaaaaattacaagcaagtctataatgag
tttgtcaaaaataactttacgctggataatgaattcacatggaatgatgttgtatacaat
gaattagtggattctttaaatctgcacattgataaaatgccagctcaacgtagagatata
tttttaatgagtagaaaagatggcctttcaaatcaagaaatagccaaaaatcttaatatt
tctcttagaactgtagaaaatcaaatttatcgttctgtctcttatctcagggaacagtta
aaacctaactcagtatttttgctattgctatttttccttaacagttaa
DBGET
integrated database retrieval system
