Labilibaculum antarcticum: ALGA_4228
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Entry
ALGA_4228 CDS
T05376
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mbas
Labilibaculum antarcticum
Pathway
mbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALGA_4228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbas03019
]
ALGA_4228
03400 DNA repair and recombination proteins [BR:
mbas03400
]
ALGA_4228
Enzymes [BR:
mbas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ALGA_4228
Messenger RNA biogenesis [BR:
mbas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALGA_4228
DNA repair and recombination proteins [BR:
mbas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ALGA_4228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAX82519
UniProt:
A0A1Y1CPY0
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All DBs
Position
5426871..5428787
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AA seq
638 aa
AA seq
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MLHNLLQDNFGFSDFKPGQKEVISNILEGKSAIAIFPTGSGKSLCYQLPALQLPEITVVV
SPLLALIKDQIDFLQSKNISAVRIDSSLSKEEEQDIMNGIRAKRHKILMISVERFKNERF
RRFLKDIPISLLVIDEAHCISEWGHNFRPDYLKLPDYRDDFKAKQVLLLTATATPKVIAD
MSKKFAIAKEQVIITGFYRSNLNLNVIPVIQSKKNDKLISLLLSRKNECGIVYVTQQKTA
EVVSTILSSKGIISKAYHAGLKSEDREEIQNQFMANKINCVVATIAFGMGIDKSNIRYVI
HYDLPKSTENYSQEIGRAGRDGIKSDCIVLANHDNVNVLENFIFGDTPALSGIKEILRRV
KKAETSWEIKLNTLPAYTNIRILPIKTLLVYMEIRGIIKPQYSYFADYRFSLNRDEKSII
EKFQGERKKFIQAIFDHSEKARKWTTVNFNTISQNYSTDRNRVVSALEYFDAEKLINLEA
KLMVDVFAVTNPDFDIDEVAQELYDSFKKKEGVEVNRIRKMLSLFESETCISKNLANYFG
EHPEWEKCGHCSVCNSGAVKIAKSHELKNLHEYNYIEICQSAITKFGDHLTDELLTKFLC
GINTPIFTRLKLKNEKHFSSLENYRFGDVLEWVKENIN
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgttacacaatctgttacaagataattttggattttctgattttaaaccaggacaaaaa
gaggttatctctaatatactggaaggaaaatcagcaatagccatatttccaacgggatct
gggaaatctctttgttaccagctcccagctcttcaacttcctgaaattaccgtagtggtt
tctccattactggccttgattaaagatcagattgattttcttcaatcgaagaatatatcg
gcagtgcgtattgattcatctctctcgaaagaggaagaacaagacattatgaatggcatt
cgcgccaaacgacataaaattttaatgatatcggttgagcgttttaaaaatgaacgcttt
cgcagatttttgaaagacattccaatctcattactggttattgatgaagcacattgcatc
tcggaatggggacacaatttcagacctgattatttaaaactacctgattaccgggatgat
ttcaaggccaaacaagtacttttacttactgcaactgcaactccgaaagttatagcagac
atgagtaaaaagtttgccatagcaaaagagcaggtaataattaccggattttaccgatct
aatttaaatttgaatgttattcctgtcattcaatcgaagaaaaacgataagttgatctca
ttacttctttcccgtaaaaatgaatgcggaattgtatatgtaactcaacaaaaaacggcc
gaagtagtttcaaccattttatcatcaaaaggaattatttccaaagcataccatgccgga
ttgaaaagtgaagatcgtgaagaaattcaaaatcaatttatggctaataaaataaattgt
gtggtggcaacaattgcttttggaatgggaatcgataaatcgaacattcgatatgtgatt
cattacgatcttccaaaatcaacagaaaactattctcaggaaattggaagggcgggtcgc
gatggaataaaatcagactgcattgttttagcaaatcatgacaatgtgaatgtgcttgag
aatttcatatttggagacacacctgccctatcaggcataaaggaaattctaagacgcgta
aaaaaggctgaaaccagctgggaaatcaagttaaatacacttccagcctatactaatatc
cgaattctacccatcaagaccttgctggtttacatggagatacgcggaattatcaaacct
cagtacagttactttgcagactatcgatttagcttaaatagggatgaaaaaagtatcatc
gaaaagttccaaggagaacgaaagaaatttattcaggctattttcgatcattccgaaaaa
gccaggaaatggaccacggtaaattttaacactatcagtcaaaattattcgacagataga
aaccgggttgtctcagctcttgaatattttgatgctgagaaattaatcaatttggaagcg
aaactaatggttgatgtttttgccgttacaaatccagattttgatatcgatgaagtagcc
caagaactttacgacagctttaaaaagaaagaaggagttgaagtgaacagaattcgtaaa
atgctaagtctgttcgaatccgaaacatgcatcagtaaaaatctggcgaattattttgga
gaacatcccgaatgggaaaagtgtggtcactgttctgtttgcaattcgggagcagtaaaa
attgcgaaatcacacgagctgaaaaacctgcacgaatataattatatagaaatctgtcaa
tctgccattaccaaatttggtgatcatttaacggatgaactacttaccaaatttttgtgt
ggcataaacacgcctattttcacccgtttaaaattgaaaaatgagaagcacttttcctct
ctcgaaaattaccgatttggtgatgttttagaatgggtaaaagaaaacataaattaa
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