Candidatus Methylopumilus planktonicus: BN1208_0127
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Entry
BN1208_0127 CDS
T03869
Symbol
rpoN
Name
(GenBank) RNA polymerase, sigma 54 (sigma N) factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
mbat
Candidatus Methylopumilus planktonicus
Pathway
mbat02020
Two-component system
mbat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BN1208_0127 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN1208_0127 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbat03021
]
BN1208_0127 (rpoN)
Transcription machinery [BR:
mbat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN1208_0127 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CEZ19023
UniProt:
A0A0D6EUA6
LinkDB
All DBs
Position
1:complement(124237..125646)
Genome browser
AA seq
469 aa
AA seq
DB search
MKQNLQFKASQHLSLTPQLQQSIKLLQMSSVELNQELEILIQQNPLIEMLEEDEEDGKDI
AITPQEETSFEILNDQEIQDPIYEHEINWDEEYAKDNNYIDSNEYRESAAQTLKQYLEDI
FHLIPIGEKDQAIISLLIDSINEDGYLEEPLDYFLSSIPKEYEVSIEEIESLLKLLQKQA
PPGIGARDLIECLTLQLESKEESPIHILSIKVIKSHLNLLASRDFVKLKKILGCEDEVLR
EIQKVIKSLNPKPGNIFSTIESHHFVQHEVNVKKVKANWQVSLNEQAIPKLRLNHIYRDL
IKNSQADSAHHLSSQIQEAKWIVKNIQQRFVTILKVSEAIMKHQKDFLDYGESMMKPLIL
REIAEEVGLHESTISRVTSNKYINTPRGIYELKFFFGSSIDNSSGNELASTAIRAKIKEV
IKQEDPKKPLSDSEIVLLLKNQDINIARRTVAKYREILNIAPTNLRKIL
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaatcttcaatttaaagcgtctcaacacttatcgcttactcctcaacttcaa
cagtctattaagcttctccagatgtcatctgtggagcttaatcaagaacttgaaattctc
attcaacagaaccctttaattgaaatgctagaggaagatgaggaagacggtaaagatatt
gcgataactcctcaggaagaaacttcatttgaaattttaaacgatcaagaaatccaagat
cctatttatgaacacgaaattaattgggatgaagaatacgcaaaagataataattatatc
gattcaaatgagtatcgagagtctgcggcacaaaccctaaaacaataccttgaagatatt
tttcatttaattccaattggcgagaaggatcaagcaattatttctcttctaatagattca
atcaatgaagatggctatttggaagagcctctagattacttcttatcaagtattccaaag
gagtatgaagtaagtattgaagaaatagaatccttactaaaattacttcaaaaacaagcg
ccacctggaattggcgcaagagatcttattgaatgcttgacgcttcaacttgaaagtaag
gaagaaagtccgattcacatactttccattaaagttattaaatctcatctaaaccttctg
gcctctcgtgactttgttaagcttaaaaaaatattaggctgtgaagatgaagtgctaaga
gaaattcagaaggtaattaaaagtcttaacccaaaacctggaaatatattttccaccatt
gaaagtcatcacttcgttcaacatgaagttaatgtaaaaaaagtaaaggctaattggcaa
gtttcattaaacgaacaagcaattccaaagcttcgcttaaatcatatttatcgagaccta
atcaaaaattcgcaagctgactcagctcatcatttatctagtcaaatacaagaagcaaaa
tggattgtgaaaaacatacaacagcggtttgtcacaattcttaaagtttcagaagccatc
atgaaacatcaaaaagattttttagattatggtgaatctatgatgaagcctcttatttta
agagagattgctgaagaagttggtcttcatgaatccaccatctctagagttacatcaaac
aaatatattaatacgcctcggggcatttatgagctcaaatttttctttggaagttcaatt
gacaatagctcaggtaatgaacttgcatctactgcaattagggctaaaattaaagaagtt
attaaacaagaagatccaaaaaaaccactttcagatagcgagattgttttattattaaag
aatcaggatattaatattgcacgaagaactgtggcgaaatatagagaaatactaaatatt
gctccaaccaaccttagaaaaattttataa
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