Candidatus Methylopumilus planktonicus: BN1208_0160
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Entry
BN1208_0160 CDS
T03869
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mbat
Candidatus Methylopumilus planktonicus
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbat03032
]
BN1208_0160 (topA)
03400 DNA repair and recombination proteins [BR:
mbat03400
]
BN1208_0160 (topA)
Enzymes [BR:
mbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BN1208_0160 (topA)
DNA replication proteins [BR:
mbat03032
]
Prokaryotic type
DNA Topoisomerases
BN1208_0160 (topA)
DNA repair and recombination proteins [BR:
mbat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BN1208_0160 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
HC2
Toprim_2
mSLOG
Motif
Other DBs
NCBI-ProteinID:
CEZ19055
UniProt:
A0A0D6EU78
LinkDB
All DBs
Position
1:complement(154012..156573)
Genome browser
AA seq
853 aa
AA seq
DB search
MSKLLIVESPSKAKTLQKYLGNKFEVLASYGHVRDLIPKTGAVETDNNFKMNYAIIERNS
RHVDEIARAVKKSDEVYLATDPDREGEAISWHILEILNEKKLTKDKLIKRVIFQEITKSA
IEYAIEHPRDISMPLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIIE
REIEIEKFICQEYWTIHLDSIKSKNKFQAKLVQLDNKKVEQFTITSKEDHENIVGKLLLE
SAGKTKVTRVEKKQRTRNPAPPFSTSTLQQESVRKLGFTTSRAMRIAQQLYEGLDTGSGA
VGLITYMRTDSLSLSNEAMNQIRGYIQSNFEADYLPKAPIFYKTKSKNAQEAHEAIRPTD
ISRTPQSLIGKLSPEQFKLYEMIWKRSLASQMTPAKFDAVSVDLAIGSEANLFRATGQTL
IFPGFIAIYTESLDDASNEDEDSLKLPPLETGEILTIDKIYGDQHFTEPPPRYSEASLVK
SLEEYGIGRPSTYASIISTLQDREYVILDKKRFMPTDVGRVVNKFLTEHFTRYVDYDFTA
GLESSLDEIADNNKEWIPLLKSFWDDFNKTIIEKSNIDRAEITQEAINEDCPKCGKPLFS
RLGRRGKFIGCSGYPDCDYTRNVNGDSSATNEPVLVCKDPETGKDVLLLVGPYGPYLQVG
VQEEDSKKKPKRVSVPKETSLSDLNEDIALNLLSLPKELGLHPETAKKVIVNIGRFGPYV
NYDGKFKSIPRSESIFDITLDRALELIAEAIAKNAPLRILGNDPEANLSVEIFNGRYGIY
LQKGSTKVTLSKDQDIEKITLEEALILITHKEASSKGKKKTVAKKTTVKKTSQKKEVIKK
PAAKKKAIKAKKV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacttttaattgttgaatcaccatctaaagccaaaactcttcaaaagtatctt
ggcaataaattcgaagttttggcatcttatggtcatgtacgtgaccttattccaaaaaca
ggtgccgttgaaacagataataatttcaaaatgaattatgcaattattgaaagaaactcc
aggcatgttgatgaaatcgcaagggccgtaaaaaaatctgatgaagtctatctagctacg
gatcctgacagagaaggagaagccatttcatggcatatcctggaaatactcaatgaaaaa
aaattaactaaagataagttaattaaaagagtcatttttcaggaaattacaaaatcagct
attgagtatgccattgaacatcctagagatatatcaatgcctcttgtcaacgctcagcaa
gctagaagagcgctcgactatcttgtaggtttcaatttatcacctctactttggaagaaa
atcagaagaggattatcggcgggaagagttcagagcccagcactaaggcttattattgaa
agagaaattgaaatagaaaaatttatctgccaagaatattggacgattcatttagattct
attaagtctaaaaataaatttcaagcaaaactcgttcagctcgacaataaaaaagtggag
caatttactattacttcaaaagaagatcacgaaaatattgttggtaaattgcttctagaa
agtgctggaaaaacaaaagtaacgcgcgttgaaaaaaaacagagaacgcgcaaccctgcg
cccccattctcaacatcaacacttcaacaagagtcagttcgcaaactgggttttacaacg
agccgagccatgagaattgcccagcagctatatgaaggccttgatactggcagcggtgcc
gtaggattaattacttacatgaggactgattcactctccctctcaaatgaagcgatgaat
caaattagaggatacattcagtcaaattttgaagcagattatttacctaaagcgcctatt
ttttacaaaacaaaatcaaaaaatgcgcaagaggcacatgaagctattagaccaacagat
attagtcgaacaccccagagccttatcggtaaattgtctcctgaacaatttaagttatac
gaaatgatatggaagcgatctttagctagccaaatgacgccagcaaagtttgatgcggtg
agtgttgatcttgcaattggctctgaagcaaatttatttagggcgacggggcaaacgctt
atattcccaggatttattgctatctatactgaaagcttagatgacgcttcaaatgaagat
gaagactctcttaaattacctccacttgaaactggtgaaattctaactattgataaaatt
tatggtgatcaacatttcactgagccaccgcccagatactctgaagccagcctagtcaaa
tctttggaggagtacggcattgggagaccttctacctatgcaagtattatttcaacactt
caagatcgtgaatatgtcattctcgataaaaaaagatttatgcctactgatgtaggtcgt
gtagttaataaatttttaactgagcattttacccgctatgtagattatgattttactgct
ggtcttgaaagctctttagacgaaattgcagataataataaagaatggattccgcttctt
aaaagcttttgggatgacttcaataaaacaattattgaaaaatcaaatatcgatcgagct
gaaattacacaagaagctattaatgaagactgtcctaaatgcggcaaacctttattctct
agacttggtaggagaggtaagttcattggatgctcaggctacccagattgtgattacaca
agaaatgtaaatggtgattcaagcgctactaatgagcctgttcttgtttgcaaagatcct
gaaaccggaaaagatgttcttctattggtaggtccctatggaccttatcttcaagtaggt
gttcaagaagaagatagcaaaaagaaacctaagcgcgttagtgttcccaaagaaacctca
ttgagtgatttaaatgaagatatagcattaaatcttctatctcttcctaaagagttaggt
ctccaccctgaaactgccaaaaaagtgattgtaaatattggacgttttggaccttatgta
aattatgatggcaaatttaaatctattccaagatccgaatctatttttgatatcacactg
gatcgagctcttgagctaatagcagaagctattgctaaaaatgctcctttaagaattttg
ggtaacgatcccgaagcaaacctttcggttgaaatttttaatggtcgctatggcatctac
cttcaaaaaggctctactaaagttaccttgtcaaaagatcaggatatcgaaaaaattact
ttggaagaggctctaatactaattactcataaagaagcttcgagcaagggcaaaaagaaa
acagtagctaaaaaaacaactgttaagaaaacatctcagaaaaaagaagttattaaaaaa
cctgcagcaaagaagaaagctataaaagctaaaaaagtttag
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