Candidatus Methylopumilus planktonicus: BN1208_0257
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Entry
BN1208_0257 CDS
T03869
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mbat
Candidatus Methylopumilus planktonicus
Pathway
mbat03030
DNA replication
mbat03410
Base excision repair
mbat03420
Nucleotide excision repair
mbat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1208_0257 (polA)
03410 Base excision repair
BN1208_0257 (polA)
03420 Nucleotide excision repair
BN1208_0257 (polA)
03440 Homologous recombination
BN1208_0257 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbat03032
]
BN1208_0257 (polA)
03400 DNA repair and recombination proteins [BR:
mbat03400
]
BN1208_0257 (polA)
Enzymes [BR:
mbat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1208_0257 (polA)
DNA replication proteins [BR:
mbat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN1208_0257 (polA)
DNA repair and recombination proteins [BR:
mbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BN1208_0257 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1208_0257 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
SCP2
WHD_BrxR
NYN_YacP
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
CEZ19151
UniProt:
A0A0D6EUG5
LinkDB
All DBs
Position
1:complement(231557..234286)
Genome browser
AA seq
909 aa
AA seq
DB search
MKTLLLVDGSSYLYRAFHGLPDLRNSRQEPTGAIYGVLNMLRKIHKEFPSDYSVCVFDAK
GKTFRNDLYPEYKANRSAMPDDLRAQIQPLHEAITAMGWPILIQEGVEADDVIGTLCKEA
TQHQFNVVVSTGDKDLAQLVNKHVTLINTMTNEKLDIEGVKDKFGLMPNQIIDYLTLIGD
TSDNVPGVEKVGPKTALKWLNEYQTLDNIVNNAAQFSGVVGENLRKALDWIPKAKDLITI
RCDLDIDKNWDNFKPKAQDPSTLENLYQRFEFKNWLNEIKEGSSENNLSGKSSEEKISIK
SPSHFISKIKYDTIFDKDLLHVWLEKIKEKKYICVDTETNSLDTMQAKIVGISIAVNAGE
AAYIPLAHDYPGAPEQLSIDTILNLLKPMLEDEKIKKIGQNIKYDAHVFLNHGIHLKGIM
HDTMLQSYVTESHQNHGMDNLSLRHLGHTCVSYEDVAGKGVNQLKFNQVDINVASHYASE
DADVTLQLNQFFNPTIESDVSLKFIYENIEMPAAGVLLKIERNGVLVDDKKLNAQSHEIG
KKILLLEEEAYQLAGQPFNLASPKQLQDILFNKLGIKSLKKTPSGAPSTDEEVLQDLALD
YPLPKLLLEHRSLSKLKSTYTDKLPKMINANTGRIHTSYNQAVAITGRLASSDPNLQNIP
IRTLEGRKIREAFIANEGSSILSADYSQIELRIMAHLSQDKRLLEAFKNNEDIHKSTAAE
IFGCDLGSVSQEQRRYAKVINFGLIYGMSVFGLSKSLGIERSAASNYIETYFARYPGVKR
YMEEAKLFAKDKGYVETFFGRRLWIPEINSSNGIRRAAAERAAINAPMQGTAADLIKLAM
ISVDQWLSQNTHLKTKMIMQVHDELVFEVPQDEINILRKELPLLMEGVANLDIPLIVDIG
VGLNWDTAH
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacactattattggtcgatggctcttcttatctttatcgggcgtttcatggattg
cctgatcttagaaacagtcgccaagaacctactggagctatttatggcgtcttaaatatg
ctccgaaaaatccacaaagagttcccttctgattatagcgtttgcgtttttgatgcaaaa
ggaaaaactttcaggaatgatctttatccagagtataaggctaatcgatcagcgatgcct
gatgatttaagagctcaaattcagccgcttcatgaagccattacagcgatgggctggccg
attctgattcaagagggtgttgaggctgatgatgtgattggtaccttatgtaaggaagcc
actcaacatcaatttaatgtcgtggtctcaacaggcgataaggatttagctcagcttgtt
aataaacatgtcactttaattaatacgatgacgaatgaaaaacttgatatcgaaggtgtc
aaagacaaatttgggctgatgcctaatcaaattatagattacttaacgcttattggagac
acctcagataacgtccctggcgttgaaaaagtaggtcctaaaactgcattgaagtggctt
aatgaatatcaaacactcgacaatatcgtaaataatgctgctcaattctcaggtgtcgtc
ggtgaaaatttaaggaaagcgctcgattggattcctaaagctaaggatcttattacgatt
cgatgtgatcttgatatcgacaaaaattgggataatttcaaacctaaagcgcaagaccca
tccactttagaaaatttatatcagagatttgaatttaagaattggcttaacgaaattaaa
gaaggtagctctgagaataatttatcaggtaaaagtagtgaagaaaaaatatctatcaaa
tcgcctagtcattttatttctaaaataaaatacgacacaatattcgacaaagatctatta
catgtatggctagaaaaaattaaagaaaaaaaatatatctgtgtcgacacagaaactaac
tcgctcgacactatgcaggcaaaaattgtaggtatatcgatagcagtaaatgccggggaa
gcagcttatattcctttagcgcatgattatcctggagctccggaacagttatcaattgat
actatattaaatttactgaagcccatgttagaagatgaaaaaattaaaaaaattggtcaa
aacattaaatatgatgcgcatgtatttttaaatcacggcatacatcttaaaggcattatg
cacgatacaatgttacaaagctatgtgacggaaagtcatcaaaaccatggcatggataat
ttaagcttaaggcatctaggtcacacctgtgtcagttatgaagatgttgctggcaagggc
gtgaatcaacttaaattcaatcaggttgatattaatgtagcatctcattatgcatctgaa
gatgccgacgtcactttacaattaaatcaattctttaatcctacaattgaaagcgatgtg
tcacttaaatttatttatgaaaatattgaaatgcctgccgctggagtccttttaaagatc
gaaagaaacggtgtgcttgtggatgacaaaaaattaaatgcacaaagtcatgaaattggt
aaaaaaattctactgctagaagaagaggcttatcaattagcaggacagcctttcaatctc
gcctcgcctaaacaattacaagatattttatttaataagctaggtattaaatctttgaaa
aaaacaccttcaggtgctccttctacggatgaagaagtattacaagatttagccttagat
tatcctttacccaaattattactcgaacatcggagtctatctaagcttaaatcaacctat
acagataaactaccaaaaatgattaatgccaacactgggcggattcatacaagctacaac
caggccgtagcaattacagggcgtcttgcaagttcagatcctaatttacaaaatatccca
atccgaaccctggaaggaagaaaaataagagaagcatttattgcgaatgaaggctcgtcc
attctatctgcggactattctcaaatagagttaagaatcatggctcacttatctcaagat
aaacgattgcttgaagctttcaagaataatgaagatattcataaatcaacagcagctgaa
atctttggttgcgacctaggtagtgtttcccaagaacaaaggcgctatgcaaaagtgatt
aattttggcttgatttatggcatgagtgtattcggtttatcaaaatcacttggtattgag
cgcagtgcggcctcaaattatattgagacttattttgcgagataccctggcgttaaacgt
tacatggaggaagcaaaattatttgctaaagataaaggttatgtagaaacattttttggc
agacgattatggattccagaaattaatagctcgaatggtattagaagagctgcagcagaa
agagcagcaattaatgcccccatgcagggcactgctgctgacctcattaagttagcgatg
atttcagtcgatcaatggctttctcaaaacacacacttaaaaacaaaaatgattatgcag
gtacacgatgagcttgtgtttgaagtgcctcaagacgaaatcaatattttacgaaaagaa
ttacctctcttaatggagggcgttgcaaatcttgatattcctcttatcgtagatatcggc
gttggattgaattgggatacggcacactag
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