Candidatus Methylopumilus planktonicus: BN1208_0262
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Entry
BN1208_0262 CDS
T03869
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mbat
Candidatus Methylopumilus planktonicus
Pathway
mbat03420
Nucleotide excision repair
mbat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN1208_0262 (uvrD)
03430 Mismatch repair
BN1208_0262 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbat03400
]
BN1208_0262 (uvrD)
Enzymes [BR:
mbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN1208_0262 (uvrD)
DNA repair and recombination proteins [BR:
mbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1208_0262 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
BN1208_0262 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CEZ19156
UniProt:
A0A0D6EUH1
LinkDB
All DBs
Position
1:complement(237170..239326)
Genome browser
AA seq
718 aa
AA seq
DB search
MNASLPNQNQFKDLNEKQVEAVTLQNESALILAGAGSGKTKVLTSRIAWLIQTNVVSPFG
LIAVTFTNKAAKEMLQRITMQLPINTRGMWVGTFHGLCNRFLKTHARDAGLPETFQILDS
QDQLSLIKRTMKVMNVDTETYAPKQVQHYINGCKDEGLRAAHVDSYDTHSKKLNEVYLEY
EKQCQKEGLVDFGELLLRCYELFEKNIAIRQHYQDRFKHILIDEFQDTSELQYKWLKLLA
GNSSFVFAVGDDDQSIYSFRGARVGNMKDLERDFHVKQIIKLEQNYRSKSNILNTANAII
DHNKNRLGKNLWTSAGEGDPIRIYTGHTDIDEAKFIVDEIKMLHREGVSLNHIAILYRSN
AQSRVLEHNIFSSNLPYRVYGGLRFFERAEIKHAIAYLRLITNKNDDSAFLRIVNFPTRG
IGSRSLEDLQDISRRDSCSLWDTAMKSSDQTPTIKKGLPYFIHLIKHIESGFEGLTLPQV
IDLIINESGLKDHYTNEKDGLDRVSNLNELVSAAATFLNNDNNESTNPLGDFLNYSSLES
GDMQASEGSDAIQLMTIHSSKGLEFDVVFISGLEEGLCPHEQSLFESKGLEEERRLMYVA
VTRARSKLYLSYALSRMLHGQTRYGMPSRFLEEIPESLVKNINTTNFKNNIDQIEENYSQ
PTQQKHTWRIGESVMHEKFGQGTVLGYEGNADDLRIQIKFTKAGTKWLAMEYAKLFKH
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcatcccttcccaaccagaatcaattcaaagatttgaatgagaaacaagttgaa
gctgtaacacttcaaaatgaatctgcactcattctcgctggtgcaggaagcggaaaaact
aaagtacttacttccagaattgcatggcttattcaaacaaacgtggtgagtccttttggt
cttatcgctgtgacatttaccaataaagctgcaaaagaaatgctgcaaagaattaccatg
cagcttcccatcaatacaagaggtatgtgggtaggtacattccatggtttatgtaatcga
tttctgaaaacacatgcaagagatgctggcttgcctgagacattccaaatattagacagc
caagatcagttatctttaattaaaagaacgatgaaagtaatgaatgtagatactgaaact
tatgcacctaaacaagtgcaacactatataaatggttgcaaagatgaaggcttaagagct
gctcatgtagatagttacgacacacattcaaaaaaattaaatgaagtctatcttgaatat
gaaaaacaatgtcaaaaagaaggcttggttgattttggtgaattgcttttaaggtgctat
gaactttttgaaaaaaatatagccattcgccagcactatcaagatcgatttaaacatatt
cttattgatgagtttcaagatacaagcgagcttcaatataaatggttaaaacttcttgca
ggtaacagcagttttgtatttgctgtgggggatgatgatcaatctatctatagctttaga
ggagctagagttggcaatatgaaagatcttgaaagagatttccatgtcaaacaaattatt
aagctagaacaaaactacagatctaaaagtaacattcttaacaccgcaaatgccatcatt
gatcataacaaaaatagattaggcaagaacttatggacttccgctggagagggtgatccc
atccgaatttatacaggccatactgacattgatgaagccaagtttattgtagatgaaatc
aaaatgcttcatagggaaggtgtatcgctcaatcatattgctattctttatagaagcaac
gcgcagtcgcgcgttctcgaacataatattttttcatccaacttaccttatcgtgtatat
ggtggattacgtttctttgagcgtgctgaaattaaacacgcgattgcttacttaagactc
attacaaataaaaatgatgacagtgcatttttaagaattgtaaattttccaacgcgcggt
attggaagtcggtcattagaagatcttcaagatatttctagacgagatagttgcagcctt
tgggatactgcgatgaaatcatcagatcaaacgcccacaatcaaaaaaggcttaccttac
tttatccatctgatcaaacatattgaaagcggttttgaaggattaacgcttccacaagtg
attgatctcattattaacgagtcagggcttaaggaccactatactaatgaaaaagatggt
ttagatagagtctctaacttaaatgaattggtttctgcagccgcaacatttcttaataat
gataataatgagtctacaaatccgcttggggattttttaaattattcctctttagaaagt
ggtgatatgcaagcgagcgagggttcagatgccatccaactcatgacgattcactcatcc
aaagggctggaatttgacgtagtctttatttcaggccttgaagaaggtttatgtccacac
gaacaaagtctttttgaatccaaagggcttgaggaggagagaaggcttatgtatgtagct
gtgacaagagctcgatcaaaactatacctaagttatgcattatcaagaatgcttcatggc
cagacaagatatggtatgccatcaagattcctggaagagatccctgagagtcttgttaaa
aacattaacacaaccaattttaaaaataatatagatcagattgaagaaaattattcacaa
cctacccagcaaaaacatacttggcgtattggtgaatctgtcatgcatgaaaaatttggc
cagggaaccgttttaggttatgaaggtaatgctgatgatttaagaatccaaattaaattt
actaaagcaggtaccaaatggcttgcgatggagtacgcaaaactctttaagcactag
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