Candidatus Methylopumilus planktonicus: BN1208_0568
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Entry
BN1208_0568 CDS
T03869
Symbol
polC
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
mbat
Candidatus Methylopumilus planktonicus
Pathway
mbat03030
DNA replication
mbat03430
Mismatch repair
mbat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1208_0568 (polC)
03430 Mismatch repair
BN1208_0568 (polC)
03440 Homologous recombination
BN1208_0568 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbat03032
]
BN1208_0568 (polC)
03400 DNA repair and recombination proteins [BR:
mbat03400
]
BN1208_0568 (polC)
Enzymes [BR:
mbat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1208_0568 (polC)
DNA replication proteins [BR:
mbat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN1208_0568 (polC)
DNA repair and recombination proteins [BR:
mbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN1208_0568 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
zf-C3HC
DUF1059
Motif
Other DBs
NCBI-ProteinID:
CEZ19455
UniProt:
A0A0D6EUR6
LinkDB
All DBs
Position
1:493053..494441
Genome browser
AA seq
462 aa
AA seq
DB search
MLSNYILLDLETTGAIPLRDRITEIALIHFKNGIEVDRWQTLVNPKINIPDFIQSLTGIT
NQMVQDSPTFEETSGKLLGYLDGAVLCAHNVRFDHGFLKAEFKRIGIDLKQKVLCTVKLS
RKLYPQYKSHGLTAIMERHKFNCTNRHRAMGDVEVMLQLIDLAKKEHGLENLEIAVAELC
KKQTLPSGIDGHLIDDMPETSGVYLFYGENNLPLYIGKSINLRSRIMSHFSSDHSSTKEM
RISQQIKHIEWVETAGEFGALLLESRLIKELQPIHNRKLRRERQLCSWLLSNNPETLPLI
SLVSEDQIIPKNMNNLFGTFRSKKQATDIILKIADEYSLCLKVLGIEVGKGSCFRSQIKR
CKGVCVGQEDKELHFLRTKQAFHSLKLKSWPFKGRIAIKEFNLKNEKIELHIFDQWRHLD
TLKNEIDMYDFKESKQILAFDLDTYQLLSRHLSNGHANVINF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgttatccaactatattttattagatcttgaaacaacaggtgcgataccgcttagggat
cgaatcacggagatcgcgctaattcatttcaaaaatggtattgaagtagaccgatggcaa
actctagttaatccaaaaataaatattcctgatttcattcagtctttaacaggtattaca
aatcaaatggtccaggattccccaacgtttgaagagacctcaggaaaacttttgggctat
ttggatggcgctgttctatgtgcgcataacgtaagatttgatcatgggtttcttaaagcg
gagtttaaacgtattggtattgatctaaaacaaaaagtactttgtaccgtaaagttatca
agaaaactctatccgcaatataaaagccatggtttaactgccatcatggaacgacataaa
ttcaattgtacaaatcggcatcgagctatgggagatgtagaagtgatgttgcaattaatt
gatcttgcaaaaaaggagcatggattagagaatttagaaatagctgtagctgagctttgt
aaaaagcagactttaccttcaggaattgatggacatttaattgatgatatgccagaaact
tccggggtttatctcttttatggggagaataatttaccactttatattggtaaaagtatt
aatttgagatctcgtatcatgtctcattttagttcggatcacagctcgactaaagaaatg
aggattagtcaacaaatcaaacatattgagtgggtagagaccgctggtgaatttggtgca
cttttacttgaatctagattgattaaagagcttcagccaattcataatcgcaaacttaga
agagaaagacagctatgctcgtggcttttatcgaacaatcctgaaactttaccgttgata
tctttggtaagtgaagatcaaattatccctaaaaatatgaataatctatttggaacattt
cgatctaaaaaacaagcgacagacattattttaaaaattgcggatgaatactccctttgt
ttaaaagtgctgggaattgaagttggaaaaggctcatgttttcgatcacaaatcaaacgc
tgtaaaggagtctgcgttggtcaagaagataaagaacttcacttcttgaggacaaaacaa
gcctttcattctctcaaattgaagtcatggccttttaaaggcagaatagctataaaagaa
tttaatttaaagaatgaaaaaatagaattacatatatttgatcagtggcggcatcttgat
actcttaaaaatgaaattgatatgtatgattttaaggaatcaaagcaaatactagcattc
gatttagatacttatcaattgttgtcaagacatctgtcaaatggtcatgcgaatgttatt
aacttttaa
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