Melittangium boletus: MEBOL_006199
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Entry
MEBOL_006199 CDS
T05066
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbd
Melittangium boletus
Pathway
mbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MEBOL_006199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbd03019
]
MEBOL_006199
03016 Transfer RNA biogenesis [BR:
mbd03016
]
MEBOL_006199
Enzymes [BR:
mbd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MEBOL_006199
Messenger RNA biogenesis [BR:
mbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MEBOL_006199
Transfer RNA biogenesis [BR:
mbd03016
]
Prokaryotic type
tRNA degradation factors
MEBOL_006199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
ATB32710
UniProt:
A0A250IN80
LinkDB
All DBs
Position
complement(7509513..7511408)
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AA seq
631 aa
AA seq
DB search
MDSSLSPRTVTGHVDVHPRGFGFLLVRSSGADPGLSAFIPPAELAPYLTDDVVSATVSRA
EDGRWSASGLSLVKRPRQEVFGEVVLRDSRVFLQPDREVGRGDWPLETQGTELRAGDAVV
AQVDTGTLRLLRRFEPGVDLSLERLLVRHGLRRDFGPEARAEVPALLARPHALGSRRDLR
GVPTVTVDSSSTRVIDDALSILPAGGDGALRVFVSIADAAEFVPEGSALEREARERATNA
YLADAMLPMLPEELSADWISLKPGEDRSCLTVELRLDPEGRITSVDVYESLLRSWARLSY
TEVAAWLDTGEFSAPMAPVREAMPWLRAAAARLAVARAGRGGIEMTRDEAFFTFDDVTGE
VSGIETVRPTSAHALVERFMVAANEAIAGWLVERGVPALFRVQEGPDPRRVADLEVFARQ
SGFAPAMGRAPTPLALAAFDRQISGTPEEPALRAVLRRALGSSRYTVVPAPHFGLAAPAY
VHFTSPIRRYADLAVHRALKHYLRGRRDFLHEDPDVERLAVHLNERTRATQRAEKERQRL
LEARVMAAHVGREFTGRVTRVRGSGLLVQLDSPLVEGLLPTDSLPGGPYTPDERETALVG
SARTFPLGMPLRVRVASTDEGLGRVELALAG
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtccctttcgcctcgcaccgtcaccggccacgtcgacgtccacccccgcggt
ttcggattcctcctcgtgcgctcctcgggtgccgacccgggactgtccgccttcattcct
ccggccgaactcgcgccctacctgaccgacgacgtcgtctccgcgaccgtgagccgcgcg
gaggatggccggtggagcgcgagcggcctgtccctcgtgaagcggcctcgccaggaggtc
ttcggcgaggtggtcctgcgcgactcccgggttttcctccaacccgaccgggaggtgggc
cggggtgactggcccctggaaacacagggcaccgagctccgcgccggggacgcggtggtg
gcccaggtcgacacgggcacgctccggctgctgcgccggttcgagccgggggtggacctc
tccctggagcggctgctcgtgcgccacggcctgcgccgcgacttcggcccggaagcacgc
gccgaggtgcccgcccttctcgccaggccccatgcactggggagccggcgcgacctgcgc
ggcgtgcccaccgtgaccgtggattcatcctcgacgcgcgtcatcgacgatgcgctctcc
atattgcccgccgggggcgatggcgccctgcgcgtgttcgtctccatcgcggacgccgcc
gagttcgtccccgagggctcggcgctggagcgcgaggcccgtgagcgcgccaccaacgcg
tacctcgccgatgccatgctgcccatgctccccgaggagctgtccgcggactggatcagc
ctcaagcccggcgaggaccggtcgtgcctcaccgtggagctgcgcctcgatcccgagggt
cgcatcacctcggtggacgtctacgaaagcctcctgcgctcgtgggcgcggctgagctac
accgaggtcgccgcctggttggacacgggcgagttctccgcgcccatggccccggtgcgc
gaggcgatgccctggttgcgcgcggcggccgcccggctcgcggtggcgcgggccggacgt
ggcggaatcgagatgacgcgcgacgaggccttcttcaccttcgacgacgtcaccggcgag
gtgtccggcatcgagaccgtgcggcccacgtccgcgcacgccctcgtcgagcgcttcatg
gtggccgccaacgaggccatcgcgggctggctcgtcgagcgcggcgtgcccgccctcttc
cgcgtccaggagggaccggatccccggcgcgtggcggacctggaggtcttcgcgcggcag
tcgggcttcgccccggccatgggacgcgcgcccacgcccctcgccctcgccgcgttcgac
cggcagatctccggaacccccgaggagcccgcgctgcgcgcggtgctgcgacgcgcgctc
ggatcctcgcgctacaccgtcgtgcccgcgccccacttcggcctcgcggcacccgcctac
gtgcacttcacctcgcccatccggcgctatgccgacctcgccgtccaccgcgccctcaag
cactacctgcgtggacggcgcgacttcctccatgaggatccggacgtcgaacggctcgcg
gtgcacctcaatgagcgcacccgggccacccaacgcgcggagaaggagcggcaacggctc
ctggaggcccgggtcatggccgcccacgtgggccgggagttcaccggacgcgtcacgcga
gtgcgcggctccggcctgctcgtgcagctggacagtccgctcgtggagggcctgcttccc
acggactcgcttcccggcggtccctacacgccggatgaacgggagacggccctcgtgggc
tccgcgcggacattcccgctcggcatgccgctgcgcgtgcgcgtggcctccacggatgaa
ggcctcggccgcgtggagctggcactcgccgggtag
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