Drepanopeziza brunnea: MBM_02718
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Entry
MBM_02718 CDS
T03105
Name
(RefSeq) eukaryotic initiation factor 4A-12
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03013
Nucleocytoplasmic transport
mbe03015
mRNA surveillance pathway
mbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MBM_02718
09122 Translation
03013 Nucleocytoplasmic transport
MBM_02718
03015 mRNA surveillance pathway
MBM_02718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbe03019
]
MBM_02718
03041 Spliceosome [BR:
mbe03041
]
MBM_02718
03009 Ribosome biogenesis [BR:
mbe03009
]
MBM_02718
03012 Translation factors [BR:
mbe03012
]
MBM_02718
Enzymes [BR:
mbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MBM_02718
Messenger RNA biogenesis [BR:
mbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
MBM_02718
mRNA cycle factors
Stress granule specific factors
MBM_02718
Spliceosome [BR:
mbe03041
]
Complex C
Other components
EJC/TREX
MBM_02718
Ribosome biogenesis [BR:
mbe03009
]
Eukaryotic type
90S particles
Helicases
MBM_02718
Translation factors [BR:
mbe03012
]
Eukaryotic type
Initiation factors
eIF-4
MBM_02718
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
COG4_N
TniB
AAA_22
Flavi_DEAD
Gp6_2nd
Motif
Other DBs
NCBI-GeneID:
18758653
NCBI-ProteinID:
XP_007290607
UniProt:
K1X2N0
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MADGIDRKAEERMEFTTSADVSVAPTFQSMHLKENLLRGIYAYGYESPSAVQSRAIVQIC
KGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM
NVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQ
KERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLLT
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtatcgatcgcaaggcggaggagcgcatggagttcactacgtccgctgac
gtatcagtggcgccgacatttcaatcaatgcatctcaaggagaaccttcttcgaggcatc
tacgcctacggatacgagtccccctcggctgttcagtctcgcgcaattgtccagatctgt
aagggtcgcgacaccattgcccaggcgcaatcgggtacgggtaaaacagctaccttctcg
atcagtatgcttcaggtcatcgacacggccgtccgcgagactcaagccctcgtcctgtct
cccactcgagaacttgcgacacagattcagtcggttgttatggctctgggagactatatg
aatgtacaatgccacgcttgcatcggaggcaccaatgttggggaggatatccgcaagctt
gattatggacagcatattgtttctgggaccccaggacgagtggctgacatgattcgccga
cgaaaccttcgaactcgccatatcaaaatgctggttcttgacgaggctgacgagctgttg
aaccgcggtttcagagagcaaatctatgacgtttacagatacctccctcctgcgacccag
gttgtggttgtttctgctactctcccttacgatgtgctcgacatgaccaccaaattcatg
acggatcccgttcgtatcctagtcaagcgtgatgaattgactttggaaggcctcaagcaa
tactttatcgcagtcgagaaggaggattggaagttcgataccctgtgcgatctctacgat
accctcactattacacaggcggttatcttctgcaacacgcgcagaaaggtcgattggttg
acggataagatgcgcgaggccaacttcacggtttcctcgatgcacggggagatgccacag
aaggagagagacagcatcatgcaggatttccgccagggaaactcgcgggttctgatctct
acggatgtctgggctcgtggtatcgacgtccagcaggtctcgttggtcatcaactacgac
ttgcctagcaaccgtgagaactacatccacagaatcggtcgcagtggtagattcggacgc
aaaggtgtggcgatcaattttgtgactagcgaagacgtcagaatattgagagatatcgag
ttatactactcgactcaaatcgatgagatgccgatgaacgttgcggatcttctgacatag
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