Drepanopeziza brunnea: MBM_03328
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Entry
MBM_03328 CDS
T03105
Name
(RefSeq) topoisomerase II-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MBM_03328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbe03019
]
MBM_03328
Messenger RNA biogenesis [BR:
mbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MBM_03328
mRNA degradation factors
5'-3' decay
Decapping complex
MBM_03328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
18759263
NCBI-ProteinID:
XP_007291217
UniProt:
K1WKV7
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MSFFGFDSSLPRHRDYDQDHGHNRNHNPVHNHNTAAPGFSQAADPFAGLSRHEDDDDALN
FDDTYDGLGDQLDETDDAFNDDTFGGGPSEAAPKPVGKDFDFFGQTAKVSDAISEEQARF
TRQQPISKVIPNPSAHAQQQQRPVRTGYERYNEPEYVPDMQVDANLWGVAPKRNAHVPAA
ESLPTPGLVPAGRKMMSLEEVEAAMRAQVKKPAQAQQQQQYLATSPAQHPQQYIHPSQHS
QPYIPQQSQPQFPVQARGPQRDGTSPAPAGQPVHISHRSQQQPSAQSANQAGPSPPTYIL
QNPNRFPTEQNRPPQAGRNPSHQQQHGHQSRHSGSRHIITHPDQFTTMSEEERAVFLLEE
AKRAKRNHKIFLLSRDNGLMTPQDKNFITRIQLQQLVTATGNPNEHGTDFGLSEDFYYQV
HNQIRGGPRQHPGQPLSNFAQTYLFQTGGRHGGMRRQARGGDNHMQRMEQQVQRAVEAAK
NKPKIKQLVIEGSLGKISFSNAKTPKPLLNIKRTDSGTDANRPGSSYRDRKSHLAGVSGS
DRKTVLADIESVYNTLMKMEDHDRHIPPPLNEDINPELVGLHMNWQEKAQKLNSQLWFQL
KVHEPIGATTTHPFIAFLSFAKGKKAIPRVFRHVSQEQRTTILTMIVIHLDQLDVVRHAL
LLPGETQLNATVRESIDVFSLAVMPPLFGYLNEAGLDIVTGVLGLILNINVDMIARTRIG
VSMLTMILSRAELIKQAGSVDEREWQEWVDKYNAFFDALEPSLPSIFPGTVNTGEDIYVW
QFLAAIGIGASPEQQQRLVMAVKDRVMETVNLAKTLPPAMSSQRLANVNLFMRSIGLDVE
LLA
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcttcggctttgactcctccctcccccgccatcgcgattacgatcaagatcac
ggccacaatcgcaaccacaaccccgtccacaaccacaacactgccgccccgggcttctca
caggctgcagacccatttgcaggcctctctcgacatgaagatgacgatgatgcactcaac
tttgatgatacatatgatggacttggggaccaattggacgagacggatgatgccttcaac
gacgatacctttggtggcggtccctcggaagcagctcctaagcctgtaggcaaggacttt
gattttttcggtcaaactgcaaaagtctcggacgccatcagcgaggagcaggcgcgcttc
actcgacagcagcccatctcgaaggtgatcccgaatccttcggcacatgcgcagcaacag
cagagaccggtacgaactggctacgaacgatataatgagccggagtacgtccccgacatg
caggttgacgccaatttgtggggtgttgcacccaaacgtaatgcgcatgtcccagctgcc
gaatctcttccaacccctggcctcgttcctgctggccgaaagatgatgagtttggaggaa
gttgaggcggccatgcgagcccaggtcaagaagccagctcaagcacagcagcaacaacag
tacctagcaaccagccctgctcagcatccacaacaatacattcatccttctcaacattct
cagccgtacattccacagcagtcccagccacaattccctgtgcaagctcgtggtcctcag
cgcgacggaacgagcccagcgccagctggccagcctgttcacatttcgcaccgatcgcaa
cagcagccatccgcgcaatccgctaatcaagcaggtccatccccgccgacctacatcttg
caaaacccgaaccgtttccctactgagcaaaacagaccgccccaagctggacggaatccc
agtcatcagcagcaacatggccaccagtcgcgacactctggttctcggcacattattact
caccctgatcaattcactaccatgtccgaggaggagagagctgtatttcttttggaggaa
gccaagagagcgaagcgaaatcacaagatatttctgctttctcgggataatgggctgatg
acccctcaagacaagaacttcattacccgaatccaattacaacagctcgtcacggcgacc
ggcaatcccaacgagcacggaaccgattttggcctgtccgaggatttctactaccaagtg
cataatcagattcgtggaggtccccgccaacaccctggccaaccgctgagcaactttgcg
cagacctacctttttcagactggaggtcgtcacggtggtatgcgccgacaagctcgaggt
ggtgacaaccacatgcagcgcatggagcaacaagtccaacgagctgttgaagccgccaag
aacaagcccaaaatcaagcagttggtcattgagggaagcttggggaagatctctttcagc
aatgctaagacaccaaagccgctcctcaacatcaagcgcaccgatagcggaactgatgca
aaccgacccggaagttcttatcgtgaccgcaaatctcatcttgccggcgtaagcggtagc
gacagaaagactgttctggccgacatcgagagcgtttacaacactctgatgaaaatggag
gaccatgatcggcacattcctccaccgctcaacgaggatatcaacccagaacttgtcggg
cttcacatgaattggcaagaaaaggctcaaaagctgaacagtcaactctggttccaactg
aaggttcatgagcctattggcgccaccaccactcatcctttcatcgcttttttgtcgttt
gctaagggcaagaaggccatcccccgagtcttccgacacgtctcgcaagagcaacgcacc
actattctcaccatgatcgtcattcacctggatcaacttgatgttgttcgacatgcattg
ctgttgccaggcgagacccaactcaacgctacggtgcgcgagagcatcgacgtcttctct
ttggcggtgatgccccctcttttcgggtatctcaacgaggcgggattggatattgttaca
ggagttctgggactcattctgaacatcaacgttgacatgattgctcggacgcgaattggt
gttagtatgttgaccatgattttgagtcgggcagagcttatcaagcaagctggaagtgtc
gacgaacgagagtggcaagaatgggtggacaagtataacgcattcttcgatgctctcgag
ccatcccttcccagcatcttcccgggcactgtcaataccggcgaggacatctacgtgtgg
caattcctcgcggccattggcatcggtgcgagtcctgaacagcagcaacgtcttgtcatg
gctgtcaaggatcgtgtcatggaaactgtcaaccttgccaagaccctccctccagcgatg
tcgagccagcgattggcaaacgtcaacctctttatgcgttcaattggattggatgttgag
ttacttgcgtga
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