Drepanopeziza brunnea: MBM_05585
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Entry
MBM_05585 CDS
T03105
Name
(RefSeq) RNA polymerase TFIIH complex subunit Ssl1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03022
Basal transcription factors
mbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MBM_05585
09124 Replication and repair
03420 Nucleotide excision repair
MBM_05585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbe03021
]
MBM_05585
03400 DNA repair and recombination proteins [BR:
mbe03400
]
MBM_05585
Transcription machinery [BR:
mbe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MBM_05585
DNA repair and recombination proteins [BR:
mbe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MBM_05585
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
18761520
NCBI-ProteinID:
XP_007293474
UniProt:
K1WTA0
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MSGPARAGDIPMEGFVDRLLRGGSNKRFLAESRQTVRKIKLLTAPHTPAHQGLPRPRMSS
DDEYVQGNLDGDDSAPQTSAYGTRSTGLVKGAAAAAKGGDASAGGTRAKGRAKWEDIQRS
WDTVVEGADGSLNSTVEGLRDAGKRKRLLRDTTPVQRGIIRHFILIMDLSFAMVEKDLRP
TRYLLTLRFASEFVTEFFEQNPISQLGVLGMRDGIAIRVSEMGGNPTEHIENIKKLRDLQ
GQGNPSLQNALEMARAILHYAPAHGTREVLIISGALLTSDPGDIHETVRSLVTDRIRVSV
VGLAAQVKILSVICSKTNAGNEGNYHVALNEQHFRELVMALTTPPVTRTKTQSQPTLLMM
GFPSRISGVGKAMSYCACHSKLVRGGYLCSRCDSKVCSLPADCPVCGLTLVLSTHLARSY
HHLFPLKNWVEVPWSQAGKSKACFACLTAFPEVPSHLEKNGAEREGTSESGRYTCEDCGY
HFCIDCDVHAHEVVHNCPGCQSDSQQQQIGIAHEVKNDGDPMEE
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtccggcgagggctggggatatccctatggagggatttgtggatcggctacta
agaggaggctctaacaagcgcttcctagcggagtctcggcaaacagtccggaaaattaaa
ctcctcacagctccacacactcccgcccaccaaggactgccccgaccaagaatgtcatcc
gacgatgaatacgtgcaagggaatttggacggtgacgatagtgcgccacagacgtctgct
tatggcacgcgctcgacgggtctggtgaagggagctgctgcggcggcgaagggcggcgat
gcgagtgccggggggactcgagcgaaggggagggccaagtgggaggatatccagagaagt
tgggatacggtcgtcgagggcgcggatgggagtctcaattctacggtcgaggggctgaga
gatgctgggaagaggaagagattgttgcgcgatacgacgccggtgcaacgaggtatcatt
cggcacttcatccttatcatggatctctcgtttgctatggtggagaaggacctgcgaccg
acgaggtatctccttacgctgcgctttgcctccgagttcgtcaccgagttcttcgagcag
aaccccatttcccagctgggagtactcggcatgcgagatggaattgcgattcgcgtcagt
gagatgggtgggaacccgactgagcatattgagaatatcaagaagctgcgggacttgcaa
ggtcagggcaatccgagtctgcagaatgcgcttgaaatggcgagagccatcctgcactac
gctcctgcccacggtacccgcgaagtcctgatcatttccggagctttgcttactagcgac
cctggagatatccatgagactgtcagatctcttgttacggaccggatacgggtttctgtt
gttgggctggcggcacaagtcaagatcttgtcggtaatatgctccaagaccaatgcgggc
aacgaaggcaactaccatgttgcgctcaacgagcagcatttccgcgagctggtcatggct
ttaacgacgcccccagtcacgaggactaagacgcagtcgcagccgactctgctgatgatg
ggtttcccatctagaatctcaggcgtgggaaaggctatgagttattgcgcctgccacagc
aagctagtccgaggcggatacctctgctcgagatgcgacagtaaagtctgcagcttgccg
gctgactgtcctgtttgtgggttgactctcgttctgtcaacgcacctggctcgctcgtac
caccacctcttccctctgaaaaattgggttgaggtaccttggtcgcaagctgggaagtcc
aaggcttgctttgcgtgtttgactgcgttccccgaggtcccctcacatttggagaagaat
ggtgcggagcgtgaggggacgagcgagagtgggagatacacctgtgaggattgcggatat
cacttttgtattgactgcgatgtgcatgctcatgaagtcgtccataactgtcctggatgc
caaagcgactcacagcaacagcagattggcatcgcccacgaggttaagaacgacggcgac
cccatggaggaatag
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