Drepanopeziza brunnea: MBM_07342
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Entry
MBM_07342 CDS
T03105
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03013
Nucleocytoplasmic transport
mbe03015
mRNA surveillance pathway
mbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MBM_07342
09122 Translation
03013 Nucleocytoplasmic transport
MBM_07342
03015 mRNA surveillance pathway
MBM_07342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbe03019
]
MBM_07342
03041 Spliceosome [BR:
mbe03041
]
MBM_07342
Enzymes [BR:
mbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MBM_07342
Messenger RNA biogenesis [BR:
mbe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
MBM_07342
Spliceosome [BR:
mbe03041
]
Complex C
Other components
EJC/TREX
MBM_07342
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MBM_07342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ribosomal_L12_N
Motif
Other DBs
NCBI-GeneID:
18763277
NCBI-ProteinID:
XP_007295231
UniProt:
K1WNV1
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MATEEDLIDYSDEELGTNDAAPAAAANGGAKKGTATGDTTDKKGSYVGIHATGFREFLLK
PELLRAITDCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAIFVLTSLQQIEPVNGE
TSVLIMCHTRELAYQIKNEYARFSKYMPDVKTSVFYGGTPIQKDAEILKNKDTHPHIIVA
TPGRLNALVRDKFLRLGSCKIFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATL
SQEVRPICKKFMQNPLEIYVDDEKTLTLHGLNQFYIKLDEKEKNRKLNELLDDLQFNQAI
IFVKSTVRATELDKLLTECNFPSVAVHSGVSQEERIKRYKAFKDFQERICVATDVFGRGI
DIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEADEEVLKSVEKRFEADV
PEFPAEGIDSSIYMAN
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgaggaagatctcatcgattactccgacgaggagctcggaaccaacgacgcg
gcgcctgctgcggctgcaaatggaggagcaaagaaggggacggctactggagacaccacc
gacaagaagggcagttacgttggtattcatgcgactggtttccgggaattcctcttgaag
cccgagcttctgcgtgccattaccgattgcggtttcgaacatccttcggaggttcagcaa
gtttgtatccctcaggcaattctcggaaccgatgtcctctgccaggccaaatctggtctt
ggtaagactgccatcttcgtcctcacatcgctccagcaaatcgagcctgtcaacggcgag
acctccgtgttaattatgtgccacactcgcgagcttgcataccaaatcaagaacgaatat
gcccggttcagcaaatatatgccagatgtgaagacctcggtattctacggtggaaccccc
attcagaaagacgccgagattctcaagaacaaggacacccacccccacatcatagtcgcc
acccccggtcgcctgaatgctctcgttcgtgacaagttcctccgtcttggaagctgcaag
atatttgtcctcgatgagtgtgacaagatgctggaccaaatcgacatgcgccgtgacgtc
caggagatcttccgagctaccccaacccaaaagcaggtcatgatgttcagcgccaccctc
tcccaagaggttcgacccatctgcaagaagttcatgcaaaaccctcttgagatctacgtc
gatgacgagaagaccctcactctccatggtctcaaccagttctacatcaagcttgatgag
aaggagaagaaccgcaagctcaatgaactcctcgatgatttgcagtttaatcaagccatc
atcttcgtgaagagtacggtgagagccaccgaattggacaagcttttgaccgaatgcaac
ttcccatccgtcgcagttcactctggtgtcagtcaagaggagagaatcaaacgctacaag
gcgttcaaggacttccaagagcgtatctgtgttgcgactgatgtctttggccgtggcatc
gacatcgagcgtatcaaccttgctatcaactacgacctccccgcggatgccgattcttac
cttcatcgtgttggtcgtgccggtcgtttcggtaccaagggtctctcaatctccttcgta
agcagcgaggctgatgaggaggtcttgaagtccgtcgagaagcgtttcgaggctgatgtt
cctgagttcccggctgaggggatcgactctagcatctacatggcgaactag
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