Drepanopeziza brunnea: MBM_07364
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Entry
MBM_07364 CDS
T03105
Name
(RefSeq) 5'->3' exoribonculease Dhp1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03008
Ribosome biogenesis in eukaryotes
mbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
MBM_07364
09123 Folding, sorting and degradation
03018 RNA degradation
MBM_07364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbe03021
]
MBM_07364
03019 Messenger RNA biogenesis [BR:
mbe03019
]
MBM_07364
03009 Ribosome biogenesis [BR:
mbe03009
]
MBM_07364
03016 Transfer RNA biogenesis [BR:
mbe03016
]
MBM_07364
Transcription machinery [BR:
mbe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MBM_07364
Messenger RNA biogenesis [BR:
mbe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
MBM_07364
Ribosome biogenesis [BR:
mbe03009
]
Eukaryotic type
Pre-60S particles
RNases
MBM_07364
Transfer RNA biogenesis [BR:
mbe03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
MBM_07364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
18763299
NCBI-ProteinID:
XP_007295253
UniProt:
K1X1G8
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MGVPALFRWLSQKYPKIISNVIEEQPREIDGQEIPIDTRGPNPNGEEFDNLYLDMNGIVH
PCSHPEDRPAPKDEEEMMLAIFKYTDRVVNMVRPRKLLLIAIDGVAPRAKMNQQRSRRFR
SAQEAQEKEADKAELLKMLKSQGGHIEEPEIKKAWDSNEITPGTPFMDILAASLRYWIAY
KLNTDPAWAKMKVIISDSTVPGEGEHKIMEFIRSQRSSPHHDPNTRHVIYGLDADLIMLG
LGTHEPHFRVLREDVFAQERGPRLCRLCGQAGHEARECTGKAKVKDGEFDEKASAPALKP
FIWLHVSVLREYLAAELYVPDQPYRFDLERAIDDWVFMCFFVGNDFLPHLPSLEIRENGI
DTLIAIWRDNIPHMGGYLTKDGHVDLERAQFILDGLAKQEDAIFRRRKQTEDRREAGAKR
RKLEQDRGGRGGRGGRGGFKDSPSNGRHKPHNAAPEGLPLFAPGASISREATAMTHDMAV
NRGAIYKANLANKSAAAALKSQINGKSSIEDVTDAANKQNEPPVSALGKRKAEILEEEGD
SSTTPARDTPQPSTPKKPDDEPPPDTVRLWDEGYADRYYEQKFGADPSDIAFRHKVAKAY
VEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFANLSDIKISFEKGRIFRPFEQLMGVLP
AASRQAIPETFHDLMTDPESEIIDFYPEDFVVDLNGKKFAWQGVALLPFIDSDRLLSAMA
KKYPMLPPEVAARNGVGKDVLLVAEAHESLYADIATNFYSKKQGPPHFKLNPSTSEGLTG
KVEKNDSYLPHGSLTFPLASGEMPSLDEDRSISVHYEMPKSKHIHKSMLLRGVKFNAPAL
TQSEIAETKRKAASSGRAHGGAPLGGNGRGRNGFNYASSNQYPGSSSNDQSRGPPNHYQN
PFPPPPPGWTPPQPGGADFSRGPPPPPPGFDQYGRAQRNHQAPNPGYGGPPGYGGSNDRR
QGGNEYQGGNSYRGARGGASYRGNYGGR
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcacttttcagatggctcagccaaaaatatcccaaaatcatcagtaac
gtaatcgaagaacaaccgcgtgagattgatggccaagaaatcccaatcgatacacgaggc
cctaatccgaatggagaagagttcgacaacctctacctcgacatgaacggcattgtgcat
ccttgttcgcatcctgaggacagaccagcgcccaaagacgaagaggagatgatgttagcg
atattcaaatacacagatcgtgtagtgaacatggtccgccccagaaagctcttattaatt
gctattgatggagttgctcctcgcgccaagatgaaccaacagcgctctcgacgattccgc
tctgcccaagaagcacaagagaaggaagctgataaggccgagcttctcaagatgctaaag
tcgcaaggtggccacattgaggaaccagaaatcaagaaggcttgggattcaaacgagata
actccaggaacgccattcatggatattctagccgcgagtttgcgatattggatcgcgtac
aagctcaatacagaccccgcgtgggccaagatgaaagtcatcatctctgattctactgtc
cccggtgaaggcgagcataagatcatggaatttattagatcccagcgctcctctcctcat
catgaccccaacactcgacatgtcatctacggtcttgacgccgatctcattatgctggga
ctgggcacccacgagcctcacttccgtgttcttcgagaagatgtgtttgcacaagagaga
ggacctcgtctgtgccgtttgtgtggtcaggccggacacgaggcaagagaatgtacgggc
aaagcaaaggtaaaagatggagaattcgatgagaaggctagcgcccccgccctcaaacca
ttcatctggctccacgtgtctgttcttcgagagtatctagcagctgagctatatgtccca
gaccagccttatagatttgatcttgagcgagctatagacgattgggttttcatgtgtttc
ttcgtgggcaatgatttcttacctcatcttcccagtctcgagattcgagagaatggaatc
gacactctcattgcaatctggcgtgacaacataccacatatgggcggctacctcacaaaa
gatggccacgtcgacttggaaagagcacagtttattcttgatggactagcaaaacaggag
gatgccatatttcggagacgaaagcagacagaggatcgacgtgaggccggtgcgaagcga
cgcaagctcgaacaggatcgtggtggtcgaggaggtcgtggtggcagaggtggattcaaa
gactccccatcaaacggaagacataagccacacaacgccgcaccggaaggacttccactt
ttcgctccaggtgccagcattagcagagaggcaacagctatgacgcatgatatggctgtc
aaccgaggcgctatctacaaggcaaatttggccaacaagagtgctgccgcagcattgaag
agccagattaacggcaaatcttctattgaggatgtcactgatgctgctaataaacaaaat
gaaccaccagtatctgcacttggcaaacgcaaggcagaaattctcgaagaagaaggcgac
agcagcaccacgccagcacgggatactccacaaccttcaacccccaaaaaacctgacgat
gaaccaccacctgacactgtacgcttgtgggacgaaggttacgctgataggtattacgag
caaaagttcggagctgatcctagcgatattgctttccgccacaaagtggcaaaagcttac
gtcgaaggccttgcttgggttttgctctactactttcaaggttgcccatcatgggaatgg
tattacccgtatcattatgctcctttcgctgcagacttcgcaaatctctctgatataaaa
atctctttcgaaaagggcagaattttcagaccatttgagcagttgatgggtgttctccca
gccgcttccaggcaagccattcctgagacattccacgatctcatgactgatcctgagagt
gagatcattgatttctacccagaagatttcgttgttgatctcaatggcaagaagtttgct
tggcagggtgttgccttactccctttcattgattccgaccggctgcttagcgccatggct
aagaagtacccaatgctaccacctgaagttgcggcacgcaatggcgtcggcaaagacgta
cttcttgttgcagaggctcatgagtcactctacgcggacattgctacaaacttctactcg
aagaagcaagggcccccacatttcaagctcaatccaagtaccagtgaaggcttgactgga
aaagttgagaagaatgattcatatttacctcacggctctctaacgtttcctcttgcgagt
ggagagatgccaagcttggacgaagatcgttcaatcagtgtacattatgagatgcctaag
tccaagcatatccataaatcaatgttactccgaggtgtaaagtttaatgcccctgcattg
actcagagcgaaatcgcggagaccaagaggaaggcagccagctcaggccgtgctcatggc
ggtgctccactgggaggaaatggtcgaggacgcaatggtttcaactatgcctcgtctaac
caataccctggatcgtccagtaatgaccagtcccgtggaccccctaatcattaccagaac
cccttcccacctcctcccccaggttggactcctcctcaacccggcggggccgatttttct
cgtggacctccccctccaccccctggctttgatcagtacggtcgggctcaacgcaatcac
caggctcccaaccctggctatggtgggcctccgggatacggtggttcgaacgatcgtcgg
caaggtggcaatgaataccaaggaggtaactcgtaccgtggagcacgtggtggtgcttca
tatcgtggaaactacggaggacgttaa
DBGET
integrated database retrieval system
