Drepanopeziza brunnea: MBM_07577 Help Entry MBM_07577         CDS       T03105                                  Name (RefSeq) DSHCT domain-containing protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism mbe  Drepanopeziza brunnea Pathway mbe03018   RNA degradation Brite KEGG Orthology (KO) [BR:mbe00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     MBM_07577  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mbe03019]     MBM_07577 Enzymes [BR:mbe01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      MBM_07577 Messenger RNA biogenesis [BR:mbe03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      MBM_07577   mRNA degradation factors    3'-5' decay     Ski complex      MBM_07577 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk Helicase_C ResIII DEXQc_Suv3 Ski2_beta-barrel ATPase_2 Motif Other DBs NCBI-GeneID:  18763512 NCBI-ProteinID:  XP_007295466 UniProt:  K1WPP6 LinkDB All DBs Position Unknown AA seq 1281 aa AA seqDB search MAESLIDALEKVHLSAATAEDTADDWIDSILSEQRPRKRVKKSPEDLKRELEQKYLTPST KFSAEWLNKLQQRWEAPTDYTALFKIAPTQTRTITRFTREGLSGRVTGYKEVTVPANSAT AKNSTSFLRKPANRADFVRGAAGFFPFAPGGLEGVEAAAALEEQALKSGNEDLLGGGTKS KLERVINIGEGGLLEVAPGFKRGLDFGKKKKTEGDEKEADEVLGVLDEEPAHELPEEKAS AVAGDSSDTSEEEGEDDIDSLLPVEFPALEPRGVLAASSSKRGGREWAHMVDIKRDITNF RELVPDMAREWPFELDTFQKEAVYHLETGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKA IYTSPIKALSNQKFRDFRQIFDEVGILTGDVQIAPEASCLIMTTEILRSMLYRGADLIRD VEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDIY VISTPKRPVPLEHYIWAEKGIYKIVDAEKRFLEKGWKDANDVLSGKNKVKALPPAEANTR GGGNARGGRGQNQRGGNQRGGGQRGGAPQRGRGGPPRASHAPGHMGRGGRPGGRTSAAQD KTLWVHLVQFLKKESLLPACIFVFSKKRCEENADALSNQDFCTATEKSAIHMIIEKSIAR LKPEDRVLPQIVRLRDMLGRGIAVHHGGMLPIVKEVVEMLFAQTLVKVLFATETFAMGLN LPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDPVGSVIIVAPGGGEAPPVTE LRQMILGDPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKV SEADLAKIKREPCNTCDTDLEKCHQAAQNVIQLTLDLHLGLLATPVGRRLFSAKRLIVYS RDGIRTPGILLREGATSGPAPTVHVLEIKTSRDQRDSTDLFPYLPKFRKFFTKLPQHKKH IHVKTLQIPVADVQCVTNTVVKGVIPEIFSGGDAYQEAKGQISRLCQSWESDQWNELDWT KLKDMQLRDNLAKRMDEATIAQKAECLKCPQFVKHFAMCHDQWLIQENISQLRQLMSDQN LQLLPDYEQRIQVLKDLNFVDESSRVELKGKVACEIHSADELVLTELILDNVLAPYEPAE IVALLSAFVFQEKTDTVPNLTGNLERGMKTIIEISEKVNERQTYHQVILSSDDSNDFVSR PRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRVITRLDETCREVKNAARIIGDPELFA KMQTCQEMIKRDITAVASLYM NT seq 3846 nt NT seq  +upstreamnt  +downstreamnt atggctgaaagtctgatcgatgctctggaaaaggtccacctgtcagcggccactgcagaa gacacagcagacgactggatagacagcattctctcagaacaacgcccccgaaaacgagta aagaagtctccagaggacctcaagcgcgagctggaacagaaatacctgacaccatctact aaattctctgcagaatggcttaacaagctccagcagagatgggaagctcccacggactac acagccctctttaaaatcgcaccgactcagacccggactattacccgtttcacgcgtgaa ggtctctccgggagagttactgggtataaggaggtgacagtaccggcaaacagcgccacg gcgaagaacagtacctctttcctgcgtaagccagcgaatagggcagacttcgtaaggggt gctgcaggattctttccttttgcaccgggtggattagagggtgttgaagctgcggcagca ctagaggaacaagctttgaagagtggcaatgaagatctgctcggtggtggcacaaagagc aagctcgagagggtgatcaatattggagagggggggctgctggaggttgcgccggggttt aagaggggtctggactttgggaagaagaagaagaccgaaggtgatgagaaagaggcagat gaagtcctgggcgtgttggacgaagagcccgctcatgagctgccagaagaaaaagcaagc gctgtcgctggggattcgagcgatacttcagaagaggaaggagaggacgacattgactct ttgcttcctgttgaattcccagctttggaaccacgtggtgtactcgctgcgtccagttcg aagaggggaggtcgggaatgggctcatatggttgacatcaagcgagacattactaacttc cgtgagctcgtgcccgatatggctagagaatggcctttcgagctcgacactttccaaaaa gaagcggtctaccatctcgagaccggcgattcggtattcgttgcagcacatacgtctgct gggaagacagtagtggccgaatatgctattgctctcgcagccaagcatatgaccaaagcc atctacacgtctccaatcaaggctttgagtaaccaaaagttccgggacttcagacagatc tttgacgaagttggaatcttgacaggcgatgtgcagattgcaccagaagcaagctgtctc atcatgactaccgagattttgcggagtatgctttacagaggagcagatctcatcagagat gtcgaattcgtcatcttcgacgaagtgcactatgtcaatgatctcgagcgaggagtagtg tgggaggaggttatcatcatgttgccagagcatgttacattaattcttctatctgctaca gtcccgaatacttacgagtttgcatcttgggttggtcgaacgaagaagaaagacatttat gtcatttcaacaccgaagcgaccagtgccacttgagcattatatttgggccgagaaaggt atctacaagattgtggatgcggagaagcggttcctcgaaaagggctggaaagacgcaaat gatgtcttgtccggtaaaaataaagtcaaggcccttcctcctgccgaggctaacactcgt ggtggaggcaatgcccgtggaggcagaggccaaaaccagcgtggtggaaatcaaagaggc ggtggccagcgtggaggtgcgccacagcgaggccgaggaggaccccctcgtgcaagccat gctcctggccacatgggaagagggggccggcctggcggtaggacatctgctgctcaggat aagactctttgggttcatcttgtgcagtttctgaagaaagagtctctgcttccagcttgc attttcgtattctccaagaagcgatgcgaagaaaatgcggatgcgctcagcaaccaggat ttctgcactgcgacagagaagagcgccattcatatgatcattgaaaaatcgattgcaaga ttgaagccggaagaccgtgtcttgccgcaaattgtgcgcttgcgagacatgcttggccga ggtattgctgtccatcacggtggcatgcttcccattgtcaaggaagttgttgagatgctc tttgcacagacccttgtcaaagttctgtttgcgacagaaacttttgccatgggactgaac ctgccaactcgtacagtcgtcttctcgggatatcgaaaacatgatggccattcgttccgc aacttactgccaggtgagtatactcagatggctggtagagctggtcgaagaggtctggat cctgttggatcagtgatcatcgtcgctcctggcggtggtgaagctccaccagtgactgag ctgcgacaaatgattctcggagatccctccaagcttcgatcgcagttcagattgacgtac aacatgatcttgaacttgcttcgtgttgaggcgctaaagatcgaagagatgattaagcga agtttcagtgagcatgctactcagcaactcctaccggagcacgagaaggctgtcaaagta tcggaagcggatttggccaaaatcaagcgggagccctgcaacacctgtgatactgatctt gagaaatgtcatcaggctgctcagaacgtcatacagcttacactggacttgcatcttggc ctacttgccactcctgtcggacgacgattgttttctgctaagcgattgatcgtctacagc agggatggtattagaacacctggcatacttcttcgcgaaggtgccacatcgggtcctgct cctactgttcacgtactggagatcaagacctcaagagaccagagagactccactgacttg ttcccgtacttgccgaagttcaggaagttcttcaccaaactgcctcagcataagaaacat atacacgtcaaaacattgcagatacctgtcgctgatgtacaatgtgttaccaacacagta gtcaagggtgtcatcccggagatcttctctggtggcgatgcatatcaggaggcaaaggga cagattagtcgactctgtcaatcttgggaatcggatcagtggaacgagctggactggaca aagttgaaggacatgcagttgcgcgataaccttgcgaagcggatggatgaagccactatc gcccagaaggctgagtgcctgaagtgccctcaatttgtgaaacattttgcaatgtgtcac gaccaatggctcatccaagaaaatatatcacaacttcgccagctgatgtccgaccagaac ctccagcttcttcctgactacgagcagcgtatccaagtactcaaagaccttaacttcgtt gacgaaagctctcgcgtcgagctgaagggcaaggtagcttgcgagatccactctgccgac gaactcgttctcacagaattgattctcgacaacgtcctagcaccttatgagcccgccgag atcgtcgccctactgtctgcctttgtgtttcaagaaaaaactgacaccgtgcccaacctc accggcaacctagaacgtggcatgaaaaccatcatcgagatctcagagaaggttaatgag cgtcagacttatcaccaagttatcctctcatccgatgactcgaatgacttcgtatcccga cctcgcttcggactcatggaggtcgtgtacgagtgggctcgtggcatgagtttcaaaaac atcacggacttaaccgacgtgcttgaaggtactattgttagagttatcacccgactggat gagacatgccgtgaggtaaagaatgcggcgaggattattggtgacccggagctcttcgcg aagatgcagacttgtcaggagatgatcaagagggacattacggctgttgctagcttgtat atgtag

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