Drepanopeziza brunnea: MBM_08902
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Entry
MBM_08902 CDS
T03105
Name
(RefSeq) helicase associated domain-containing protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mbe
Drepanopeziza brunnea
Pathway
mbe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mbe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MBM_08902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mbe03041
]
MBM_08902
Enzymes [BR:
mbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MBM_08902
Spliceosome [BR:
mbe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MBM_08902
Complex C
U4/U6.U5 tri-SnRNP related factors
MBM_08902
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
T2SSE
ABC_tran
Cas3-like_C_2
SRP54
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
18764837
NCBI-ProteinID:
XP_007296791
UniProt:
K1WW81
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MSGKKYALLPMEDDDLGPTKVVERKKEKRRHGEKLSSRRDKPRDRSRDRERERQRSPRRE
EHHRSKTIRKRDAHEADFEDRWGDEEYISEPEPEPEFQESASKRVKTSHADEDEEGLDDE
EKERRRDQAEKDAFVKRLHAKDADKTKKIVEDRSSTKEGTILAQRRALAEDAAARSAAMP
DLRERSRQDYLKKREAERLALLRKQVAEEQEELRSGARLTERERAEFAKNREVLRIAEER
LRIDDHLDGYAMPDDYITEKGKIDKKKKEAAMYKRYVDRDEYGQEKFVTEHEEWEKEQAA
KAKSQIQSRERDEDNEYDYVLDAEQGIKWIQDAALPGEGKGLSKEERFLAEQLKAAETKA
MSMEETRKSLPIYVYREQFLAALEDHQILVIVGETGSGKTTQLPQYLHEAGYTKGGLKVG
CTQPRRVAAMSVAARVADEMGVKVGNEVGYSIRFEDSTSDKTILKYMTDGMLLREFMTEP
DLGAYSALMIDEAHERTVHTDILLTLIKDLSRARPEMKILISSATMNATRFSEFFDDAPI
FNIPGRRYPVDIHYTPQPEANYLAAAITTVFQIHTSQGKGDILVFLTGQDEIEAAEQNIT
EISRKLGNRAAELIVCPIYANLPSELQSKIFEPTPNGARKVVLATNIAETSLTIDGIVYV
IDPGFVKENNYNPATGMSQLVAVPCSRASANQRSGRAGRVGPGKCFRLYTKWAFMNEMEE
STTPEIQRTNLNSIVLTLKSLGINDLLEFEFMDPPPTETLIGALNSLFALQALNHNGELT
SLGRKMAEFPMDIMLAKSVLSADKLGCVEEVLSIVSMLSEAAALFFRPKDKKLHADSARA
RFTVKEGGDHLTLLNIWNQWVDNDFSPIWAKENFLQQRSLTRARDIRDQIAKLCERVEVS
MSSCGAAELVPIQKAITAGFFPNAARLQRGGDSYRTVKNNSTVHIHPSSVLMDSNPPIKM
VLYFELVQTTKEYMRNCMPIKPEWLHEAAPHYHKKKDLDALEEKKMPKSRI
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggaaaaaatatgcgcttctgcctatggaagacgatgacctcgggccaacgaag
gttgtagagcgtaagaaagagaaaaggcgtcatggcgaaaaattatcttctcgccgcgat
aagcccagggataggagtcgggacagagaacgagaacgtcagaggtcaccccgccgcgaa
gagcaccaccgatcaaaaaccatccgcaaacgagacgcccacgaggccgattttgaggat
cgatggggcgacgaagagtatatttccgagccagagccagagccggaatttcaggagtct
gcgtcgaagagggtcaagacttcacatgccgacgaggatgaggaggggctggatgatgag
gagaaggagaggcggagggaccaggctgagaaagatgcttttgtgaagagactgcatgcc
aaagatgccgataagacgaagaagattgtggaagatcggtcttcgacgaaggaagggacg
attctggcgcaacggagagcgctggctgaggatgcggctgcgaggagtgcggcgatgcct
gatctcagggagaggtcgcgacaggattacctgaagaagcgtgaggcagaaagactggct
cttctaaggaagcaagttgcggaggagcaagaggagctacggagtggtgccaggctgacg
gagagggagagagcggagtttgccaagaacagagaggtgctgcgaattgctgaggagcgc
ctacgtatcgacgatcatcttgatggatatgctatgcccgatgactatatcacggagaaa
gggaagattgacaagaagaagaaagaagccgccatgtacaagcgctatgtggacagggac
gaatacggccaagagaagttcgtcacggaacacgaggaatgggagaaggagcaggctgca
aaagccaagtcacaaattcagagcagggagcgagacgaagataacgagtacgactacgtt
ttggatgccgagcagggcatcaagtggattcaggatgcggctcttcctggagagggaaaa
gggttgagtaaagaggagaggtttcttgccgagcaattgaaagctgccgagacgaaagcc
atgtctatggaagagacgcgcaaaagtctgccgatttatgtttaccgggagcagttcctg
gcagccttggaagatcatcagattctggtcatcgttggagaaacggggagtggaaagaca
actcaattgccacaatacctacacgaagcaggttacacgaaaggtggtttgaaggttggt
tgtacccaaccgcgtcgggttgccgctatgagtgttgcggcacgtgttgcagatgagatg
ggtgtcaaggttggaaatgaggttggatactctatccgatttgaagattcgactagcgac
aagactatcctcaagtacatgaccgatggtatgctgttaagagagttcatgacagagcca
gatctaggtgcatactcggctctcatgattgacgaagcccacgagagaacagtgcatacc
gacatcctattgacactgatcaaggatctttcccgggctcggcctgagatgaagatcctg
atatcttctgctactatgaatgcgacgagatttagcgagttcttcgatgatgccccaatt
ttcaacatcccaggtcgaagatatcctgtcgacatacattacacaccacaacctgaggcg
aattatttagccgcagccattaccacggtcttccaaatccacacctctcagggtaaaggt
gatatcttggtctttctgacaggacaggatgaaattgaagcagccgaacagaacatcaca
gaaatttcgaggaagttgggaaacagggcagcggaattaatagtgtgtcctatatacgcc
aatctaccgtccgaattgcaaagcaagattttcgaaccaacacccaacggtgctcgtaaa
gttgtcctggccaccaacatcgccgaaacgagtctgacaattgatggcatcgtctatgtc
attgatcctggatttgtcaaggagaacaactacaatccagcaaccggcatgtctcaatta
gtagcagtaccgtgttcacgcgcgtctgccaaccaaagaagtggtcgtgctggccgtgtt
ggacctggaaagtgcttccgactgtacactaaatgggctttcatgaacgagatggaggaa
agcaccacacccgagatccagagaaccaacctcaacagtatagttttgacactgaaatcc
cttgggattaatgaccttctggaattcgaattcatggatccacccccgaccgaaacactg
ataggcgcgctgaactcgctctttgcgctccaagctctcaatcataacggggagttgacc
tctctcggccgtaagatggcagaatttcccatggacatcatgctcgccaagtccgtcctc
tcagccgacaaacttggctgcgtcgaggaagtcctctccatcgtctccatgctcagcgaa
gcagcagctctgttcttccgccccaaagacaagaagctgcacgccgacagcgcccgtgcc
cgcttcaccgtcaaggaaggcggcgaccacctcaccctcctcaacatctggaaccaatgg
gtcgacaacgacttctctcccatctgggccaaagagaacttcctacaacagcgctcgctg
acccgcgcccgtgacatccgcgatcaaatcgccaaactgtgcgagcgggtcgaggtatcc
atgtcttcctgtggcgctgccgaacttgtgcctatccaaaaagcgatcacggcgggcttt
ttcccgaatgcggcacgtttgcagagaggaggcgacagttaccgtacggtgaagaacaac
tcaacggtgcatattcacccgagtagcgtgctcatggactcgaatccaccgatcaagatg
gtgctctattttgagcttgtgcagaccacgaaggagtatatgcggaactgtatgccgatc
aaacccgagtggttgcatgaggctgcgccgcattaccacaagaagaaagaccttgatgcg
ctagaggagaagaagatgccgaagagtaggatatga
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