Moschus berezovskii (Chinese forest musk deer): 129536591
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Entry
129536591 CDS
T09065
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mbez
Moschus berezovskii (Chinese forest musk deer)
Brite
KEGG Orthology (KO) [BR:
mbez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbez03016
]
129536591 (RTCB)
Enzymes [BR:
mbez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129536591 (RTCB)
Transfer RNA biogenesis [BR:
mbez03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129536591 (RTCB)
Prokaryotic type
tRNA splicing ligases
129536591 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
129536591
NCBI-ProteinID:
XP_055251576
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSVGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaattataatgatgagctgcagttcttggaaaagatcaataagaactgctgg
agaatcaagaaaggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
tctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgtggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccgttggtcttcctgacgtccattcaggttatgggtttgccattggaaacatggcg
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcggatttgacatt
aactgtggtgtccgcttgctgagaaccaatttagatgaaagtgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtggggtcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgcgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagccagggctaaaaaaagaggccttccccagctgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataaggggcaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaggtcgccacagatgcacttgtagctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccgtcagttggcttgtgctcgaatcgcttcc
ccagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcttccatgacattcttaacccgtcaggcttttgccaaggttttcaacacaacccct
gatgacttggacctgcatgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggacgggaaggagcggactctgttagtacacaggaaagggtccacccgagcc
ttccctcctcaccatcccctcattgcagttgattaccaacttaccggacaaccggtgctc
attggtggcaccatgggaacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaagtcaaga
cgtaatttagatttccaggacgtcctcgacaaattggcagacatgggaattgcaatccga
gttgcctcacctaagctggtaatggaagaggcccctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgctggaatcagcaagaaggccattaaactgaggccgatt
gctgttatcaaaggatag
DBGET
integrated database retrieval system
