Moschus berezovskii (Chinese forest musk deer): 129539979
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Entry
129539979 CDS
T09065
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mbez
Moschus berezovskii (Chinese forest musk deer)
Pathway
mbez03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mbez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
129539979 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbez03400
]
129539979 (LIG3)
Enzymes [BR:
mbez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129539979 (LIG3)
DNA repair and recombination proteins [BR:
mbez03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
129539979 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
129539979
NCBI-ProteinID:
XP_055257143
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MTLAFKILFPPTLRALRKKELCLFREQHHRPDIRHFGQWSETVLRGHHLLQRRKPVPSFW
ESNLRPRATCVVFLPGLHVGLYSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEENEKEQISQH
IADLSSKATSTPKKKAVVQAKLTATGQVASPVKGASFVTNSNPRKFSGFSAKPNNSGEAH
SSPTPKTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGD
GFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMTRDLEQGDVSETIRVF
FEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQEIASRCTANDLKCIIRLIK
HDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASL
MTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK
VAHFKDFIPRAFPGGHSMILDSEVLLIDNRTGKPLPFGTLGVHKKAAFQDANVCLFVFDC
IYFNDVSLMDRPLCERRKLLHDNMVEIPNRIMFSEMKKVTKASDLVDMINRVIREGLEGL
VLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYD
PGSQKWCTVTKCAGGHDDATLARLQTDLDMVKISKDPSKIPTWLKINKIYYPDFIVPDPK
KAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERAA
FAITAGDEGSSAIGGSSGENEGPSGPAVPHKAPRASPRQPPTSAKKAGGKPGGCTSRGGN
LPAAKPSSVRVGVKRKAPDATPCQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDL
VQEFDVGSATHMLGGGDRNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgactttggcttttaagatcctcttcccaccaactctccgtgcactcaggaaaaaagaa
ctgtgtctattccgagaacaacatcaccggcctgacataagacactttggccagtggtca
gagacagttcttcgtggacaccacctcctccagagaagaaagcccgttccgtccttctgg
gaaagcaacctaagaccacgtgccacctgcgttgttttcttgccagggttgcatgtggga
ctctacagtggcccctgtgaaatggcagagcaacgcttctgtgtggactacgccaagcgt
ggcactgccggctgcaaaaaatgcaaggaaaagattgtcaagggcgtatgccgaattggc
aaagtggtgcccaatccgttttcagagtctgggggcgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaggacctc
accgagctggaaggctgggaagagctggaagagaatgagaaagagcagataagtcagcac
attgcagatctgtcttccaaggcaacaagcacaccaaagaagaaagctgttgtccaggct
aagttgacagccactggccaggtggcatctccagtgaaaggtgcctcatttgtgaccaat
tccaatccccggaagttttctggcttttcagccaagcccaacaactctggggaagcccac
tccagccctacccctaagactcctaagacaagtctgtcctcaagcaaatgtgacccgaaa
cacaaggattgtctgctgcgtgagtttcggaagttgtgtgccatggtggctgaaaatcct
agctacaacacgaaaacccagatcatccaggacttccttcagaaaggctcagcaggagat
ggtttccacggtgacgtgtacctaacagtgaagctgctgctgccgggtgttattaagagt
gtttacaacttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaac
tcagatgacatgacacgagacctagagcagggtgacgtgtcagagacaatcagagtcttc
tttgagcagagcaagtctttccctccagctgccaagagcctcctcaccatccaggaggtg
gatgaattcctcctgcggctctccaagctcactaaggaggacgagcagcaacaggccctg
caggagatcgcctccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaag
catgatctgaagatgaactcaggtgcaaaacacgtgttagacgccctagaccccaatgcc
tatgaagccttcaaagcctcacgcaacctgcaggatgtggtggagcgggtcctccgcaac
gagcaggaggtagagaaggagccaggccagagacgagctctgagtgtccaggcctctctg
atgaccccagtgcagcccatgctggctgaggcctgcaagtccatcgaatatgccatgaag
aagtgtccgaacggcatgttctctgagatcaagtatgacggggagcgagtccaggtgcat
aagaagggggaccacttcagctacttcagccgcagtctcaagcccgtcctgccacacaag
gtggcccactttaaggacttcatcccccgggctttccctgggggccacagcatgatcttg
gactctgaggtgctcctgatcgacaacaggacaggcaaaccactgccctttgggactctg
ggagtgcacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgt
atctacttcaatgatgtcagcttgatggataggcctctgtgtgagcggcgaaagcttctt
catgacaacatggtggaaattcccaaccggatcatgttctcagaaatgaagaaagtcaca
aaagcttccgacttggtggacatgatcaacagggtgatccgagaggggctggaagggctg
gtgctgaaggacgtgaagggtacatacgagcctgggaaacgccactggctgaaagtgaag
aaagactacctgaacgagggcgccatggccgacacagctgacctggtggtgctcggggcc
ttctacgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgac
ccgggcagccagaagtggtgcacggttaccaagtgtgcagggggccacgacgacgcgacg
ctcgcccgcctgcagacagacctggacatggtgaagatcagcaaggatcccagcaagata
cccacctggctgaaaatcaataagatctactaccctgacttcatcgttccagacccaaag
aaagctgccgtgtgggagatcacaggggctgaattctcgaaatctgaggctcacacagcc
gatgggatctccatccgattccctcgctgcacccgaatccgtgatgataaggactggaag
tccgccacgaacctcccccaactcaaggagctgtaccaactgtccaaggagcgggcggcc
ttcgccataacggccggggacgaggggagctctgccataggaggcagcagcggggagaac
gagggcccctcagggccagctgtgcctcacaaggccccaagagcctcccccaggcagcct
cccaccagcgccaagaaggctgggggcaagccgggcggctgcaccagcagaggtggcaac
ctgccagctgcaaagccctcctctgtgagagtgggagtgaagcggaaggctcctgatgcg
accccgtgccaagccaaggtgctgctggacatcttcactggagtgcggctctacctgccg
ccctccacgccagacttcagccgcctcagacgctactttgtggcattcgatggggacctg
gtgcaggaatttgacgtgggctcagccacacacatgctgggtggcggggacaggaacccc
gaggcccagcaggtctccccagagtggatttgggcgtgtatccggaaacggaggctggtg
gctccctgctag
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integrated database retrieval system
