Moschus berezovskii (Chinese forest musk deer): 129553252
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Entry
129553252 CDS
T09065
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mbez
Moschus berezovskii (Chinese forest musk deer)
Pathway
mbez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129553252 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbez03019
]
129553252 (MTREX)
03041 Spliceosome [BR:
mbez03041
]
129553252 (MTREX)
03009 Ribosome biogenesis [BR:
mbez03009
]
129553252 (MTREX)
03016 Transfer RNA biogenesis [BR:
mbez03016
]
129553252 (MTREX)
Enzymes [BR:
mbez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129553252 (MTREX)
Messenger RNA biogenesis [BR:
mbez03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129553252 (MTREX)
Spliceosome [BR:
mbez03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129553252 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
129553252 (MTREX)
Ribosome biogenesis [BR:
mbez03009
]
Eukaryotic type
Pre-60S particles
Helicases
129553252 (MTREX)
Transfer RNA biogenesis [BR:
mbez03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129553252 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
129553252
NCBI-ProteinID:
XP_055278018
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKEKGKWKGPPGFAEKAGKCFDGKLQSESTNVG
KNKRDHDFEGAEEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKS
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggcgatgagctcttcagcgtgttcgaggacgactcgaccacggct
cctggagccaaaaaagacaaggaaaaggagaagggcaagtggaaggggccgccagggttt
gcagaaaaggccggaaaatgttttgatggtaaattacaatcagagtcaactaatgttgga
aaaaacaagagagatcatgacttcgagggtgctgaagaacctatttttggaaagaaaccc
agggtggaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaag
gtacagtcagttgaaactgtcgaagggtgtacgcatgaggttgcacttcctgcagatgaa
gattatctaccacttaaacctcgagttggaaaagctgcaaaggaatatccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtttgcgctgaatatgctattgcattggcgctaagg
gaaaaacaacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcctgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtcgtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgagtggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcgtcctactccattacagcactatatt
tttccagccgggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggcgat
cagaagggacgaaaaggaggaacaaaaggtccatcaaacgtattcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcttatgcacttcaaatgaccaaattagatttcaacacagatgaggaaaagaagatggtt
gaagaagttttcagtaatgcaattgactgcttgtctgatgaagacaaaaagctccctcag
gttgaaaatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttactt
ccgattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gccactgagacttttgctatggggattaacatgccagctagaactgttttatttacaaac
gcccggaaatttgatgggaaggatttccgatggatttcctctggtgaatatattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttattacgagtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccaatttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctactacaagattagacagcagcttgccaaattgggtaaagaaatt
gaagagtacattcacaaaccaaagtattgcttaccatttctacagccaggtcgtttggtt
aaggtgaagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaa
tcaaatgttaagcctaattctggtgaactggatccattatatgtagtagaagtacttctg
cgttgtagcaaagagagcttgaaaaattcagctactgaggctgcaaagccagctaaatct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttagactttacatccctaaagaccttcgaccactggacaatagacagagtgttcta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgatatgggcattcaggatcaaggactgaaaaaagttatccagaaagtagaggccttt
gaacatcgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgaactaaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaacggccttttcaatgaccta
tctgcagaacaagcaacagcactactgagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagacttatctaagc
tcatttaaacctcacttaatggatgtagtatacacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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