Moschus berezovskii (Chinese forest musk deer): 129559193
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Entry
129559193 CDS
T09065
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mbez
Moschus berezovskii (Chinese forest musk deer)
Pathway
mbez03013
Nucleocytoplasmic transport
mbez03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mbez00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129559193 (UPF1)
03015 mRNA surveillance pathway
129559193 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbez03019
]
129559193 (UPF1)
Enzymes [BR:
mbez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129559193 (UPF1)
5.6.2.5 RNA 5'-3' helicase
129559193 (UPF1)
Messenger RNA biogenesis [BR:
mbez03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129559193 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129559193 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129559193
NCBI-ProteinID:
XP_055286720
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGSAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVLIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcagcgccggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggtcggtggacctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagaccagccagttgttagccgag
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctccctgtacatgcc
tgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtaactctgcacaaggatgggcccctaggggagacggttctggag
tgctataactgcggctgccgcaacgtcttcctcctcggcttcatacctgccaaggccgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggatcggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cccggcgtggacgaggaaccgcagcacgtcctcctgcggtatgaggatgcctaccaatac
cagaacatattcgggcctctggtcaagctggaagctgactacgacaagaagctgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctctggaaagggatcggccatgtcatcaaggtccctgataattatggcgatgagatt
gctattgagcttcggagcagtgtgggcgcccctgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcattcgacagaatgcagagtgcactgaaaacctttgcc
gtggacgagacctccgtgtcgggctacatctaccacaaactgctcggccacgaggtggag
gatgtgctcatcaagtgccagctgcccaagcgcttcacggcgcaggggctccccgacctc
aaccactctcaggtgtacgccgtgaagactgtgctacagagaccgctgagtctgatccag
ggcccgccgggcacaggaaagacagtgacctcagccaccatcgtctaccacctggctcgg
caaggcaatgggcctgtgctggtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagaccgggctgaaagtcgtgcggctctgcgccaagagccgcgaggcc
atagactccccggtgtccttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgagaccggggagctgtcgtcggcagac
gagaagcgttacagagccctgaagcgcactgccgagagggagctactcatgaacgcagat
gtcatctgctgcacgtgtgtgggcgcaggagacccgaggctcgccaagatgcagttccgc
tccattttaatcgacgaaagcacgcaggccaccgagccagagtgcatggtccctgtggtc
cttggagccaagcagctgatcctcgtgggtgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggccgggctgtcgcagtcgctctttgagcgcctggtggtgctg
ggcatccgccccatccgcctccaggtccagtaccggatgcaccccgcgctcagcgccttc
ccgtcgaacatcttctacgagggctctcttcagaacggcgttaccgcagcggatcgtgta
aagaagggctttgactttcagtggccccaaccggataaaccgatgttcttctatgtgacc
cagggccaggaggagattgccagctcaggcacctcctaccttaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgctgaaggcgggtgccaagccggaccagatcggc
atcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggagattgccagtgtggacgcgttccagggg
cgtgagaaggactttatcatcctctcctgtgtgcgggccaatgagcaccaaggcattgga
tttttgaatgaccccaggcgacttaacgtggccctgaccagagcacgatatggggtcatt
attgtgggcaacccaaaggccctgtccaagcagccgttgtggaaccacctgctaaactac
tacaaggagcagaaggtgctggtggaggggcccctgaacaatctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgacg
acagccatgtatgatgcccgggaggccatcatcccggggtcggtctatgaccggagcagc
cagggacggccctcgaacatgtacttccagacccatgaccagattggcatgatcagtgcc
ggccctagccacgtggctgccatgaacattcccattcccttcaacctggtcatgcctccc
atgccgccaccggggtattttggacaagctaacgggccagctgcaggccgaggcaccccg
aaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagt
cagacgaatctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccag
ggcgccctgacccaaggttacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagctaccttggagatgaatttaagtcacagatc
gacgtggcactgtcgcaagactccacataccagggcgagcgggcgtaccagcacggtgga
gtgacggggctgtcgcagtactag
DBGET
integrated database retrieval system
