KEGG   Methanoculleus bourgensis MS2: BN140_0629
Entry
BN140_0629        CDS       T02189                                 
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mbg  Methanoculleus bourgensis MS2
Pathway
mbg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN140_0629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbg03019]
    BN140_0629
   03009 Ribosome biogenesis [BR:mbg03009]
    BN140_0629
Enzymes [BR:mbg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BN140_0629
Messenger RNA biogenesis [BR:mbg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BN140_0629
Ribosome biogenesis [BR:mbg03009]
 Prokaryotic type
  rRNA helicases
   BN140_0629
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII Cas3-like_C_2 Hyccin CMS1 Hera_DD Helicase_RecD AAA_30
Other DBs
NCBI-GeneID: 13354288
NCBI-ProteinID: CCJ35552
UniProt: I7LJ20
LinkDB
Position
complement(638631..640196)
AA seq 521 aa
MENNITFQDFNISQKTLQAIQDMGFEEPTPIQVSTIPVILEGRDVTGQAQTGTGKTAAFG
VPAIEQVDVGNRETQVLVLSPTRELAIQTAEEFARLAKHHRGLNILPIYGGQPIERQFRG
LRRGAQVVVGTPGRVLDHLDRGTLSFAAVKMVVLDEADQMLDMGFREDIEKILDETPGDR
QTILFSATLPGPILEISKRFQKNPEVISVARREVTVPQIEQLYLEVRSRNKLEILCRLLD
MYDPELSLVFSNTKRGVDDLTAHLQARGYFAEGLHGDMKQSQRDRVMAKFRAGTIDILVA
TDVAARGIDVEDVDLVINYEVPQDIEYYIHRIGRTARAGRTGRAITFVGPREYYKLRTIQ
DYTKIRIGRIPLPTPGDVEESRTRKLVDRVQQVIDEGSLERYMTLAERIVSEDYTSLEVA
AALLKLELDVGSQDLPQEIGPAGGPVLLEIPLGREHQIRPKDIVGALAGETGIPGRSIGA
INIYETYSTVEVPPDAVDQVIERMKGKTIAGIRLPGPIERQ
NT seq 1566 nt   +upstreamnt  +downstreamnt
atggagaataacattaccttccaggatttcaatatctcgcaaaagacgcttcaggcgata
caagatatgggctttgaggagcccacaccaattcaggtaagcacaatacccgtgatactc
gaaggacgcgacgtcaccggtcaggcacagaccgggaccgggaagacggcggcgttcggc
gtcccggcgatcgagcaggtcgatgtggggaatcgggagacccaggtccttgtcctctcc
cccacccgggaactcgccatccagaccgccgaggagttcgcccgtctggcgaagcaccac
cgcggcctcaacatcctcccaatctatggcggccagccgatcgagcggcagttccgcggg
ttacgccgcggcgcccaggtcgtcgtcgggacgcccgggcgggtgctcgaccacctcgac
cgcgggaccctctcgtttgccgcggtgaagatggtcgtcctcgatgaggctgaccagatg
ctggacatgggcttccgggaggatatcgagaagatcctcgacgagaccccgggagaccgg
cagaccatcctcttctcggccaccctccccggaccgatccttgagatctcaaagaggttc
cagaagaaccccgaggtcatatcggtcgcacgccgggaagtgaccgtcccgcagatcgag
caactctaccttgaggtacggagcaggaacaaactcgagatcctctgccggctgctcgat
atgtatgaccctgaactctcgctcgtcttctcaaacaccaaacgtggcgtcgacgacctg
actgcccacctccaggcccggggctacttcgccgaaggcctccacggagacatgaagcag
tcccagcgggaccgggtgatggcaaaattccgcgcaggaaccatcgatatcctcgtcgcc
accgacgtcgccgcccggggcatcgatgtcgaggacgtcgacctggtcatcaactacgaa
gtcccgcaggatatcgagtactacatccaccgcatcggccggacggcgcgtgccgggcgc
acagggcgggccatcacgttcgtaggcccgagagaatactacaaactcaggacgatccag
gactacacaaagatcaggatcggccgcatcccgctcccgacgccgggagacgtcgaggag
agccggacgcggaaactcgtcgaccgggtgcagcaggtcatcgacgaaggcagcctcgaa
cgctacatgaccctcgctgaacggatcgtatccgaagactacacgtcgcttgaggttgcc
gccgccctcctgaaactggaactcgacgtgggcagccaggacctcccacaggagatcgga
ccagccggggggccggtcctccttgagatcccgcttggaagggagcaccagatcaggccg
aaggatatcgtcggggcactcgcgggcgagaccggaattcccggcaggtccatcggcgcg
atcaacatctacgagacctactccaccgtcgaagtgccccctgacgccgttgaccaggtc
atcgaacggatgaaaggaaagaccatcgcggggatcaggctgccgggcccgatcgagagg
cagtaa

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