Methanoculleus bourgensis MS2: BN140_0629
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Entry
BN140_0629 CDS
T02189
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbg
Methanoculleus bourgensis MS2
Pathway
mbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN140_0629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbg03019
]
BN140_0629
03009 Ribosome biogenesis [BR:
mbg03009
]
BN140_0629
Enzymes [BR:
mbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN140_0629
Messenger RNA biogenesis [BR:
mbg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN140_0629
Ribosome biogenesis [BR:
mbg03009
]
Prokaryotic type
rRNA helicases
BN140_0629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Hyccin
CMS1
Hera_DD
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-GeneID:
13354288
NCBI-ProteinID:
CCJ35552
UniProt:
I7LJ20
LinkDB
All DBs
Position
complement(638631..640196)
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AA seq
521 aa
AA seq
DB search
MENNITFQDFNISQKTLQAIQDMGFEEPTPIQVSTIPVILEGRDVTGQAQTGTGKTAAFG
VPAIEQVDVGNRETQVLVLSPTRELAIQTAEEFARLAKHHRGLNILPIYGGQPIERQFRG
LRRGAQVVVGTPGRVLDHLDRGTLSFAAVKMVVLDEADQMLDMGFREDIEKILDETPGDR
QTILFSATLPGPILEISKRFQKNPEVISVARREVTVPQIEQLYLEVRSRNKLEILCRLLD
MYDPELSLVFSNTKRGVDDLTAHLQARGYFAEGLHGDMKQSQRDRVMAKFRAGTIDILVA
TDVAARGIDVEDVDLVINYEVPQDIEYYIHRIGRTARAGRTGRAITFVGPREYYKLRTIQ
DYTKIRIGRIPLPTPGDVEESRTRKLVDRVQQVIDEGSLERYMTLAERIVSEDYTSLEVA
AALLKLELDVGSQDLPQEIGPAGGPVLLEIPLGREHQIRPKDIVGALAGETGIPGRSIGA
INIYETYSTVEVPPDAVDQVIERMKGKTIAGIRLPGPIERQ
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggagaataacattaccttccaggatttcaatatctcgcaaaagacgcttcaggcgata
caagatatgggctttgaggagcccacaccaattcaggtaagcacaatacccgtgatactc
gaaggacgcgacgtcaccggtcaggcacagaccgggaccgggaagacggcggcgttcggc
gtcccggcgatcgagcaggtcgatgtggggaatcgggagacccaggtccttgtcctctcc
cccacccgggaactcgccatccagaccgccgaggagttcgcccgtctggcgaagcaccac
cgcggcctcaacatcctcccaatctatggcggccagccgatcgagcggcagttccgcggg
ttacgccgcggcgcccaggtcgtcgtcgggacgcccgggcgggtgctcgaccacctcgac
cgcgggaccctctcgtttgccgcggtgaagatggtcgtcctcgatgaggctgaccagatg
ctggacatgggcttccgggaggatatcgagaagatcctcgacgagaccccgggagaccgg
cagaccatcctcttctcggccaccctccccggaccgatccttgagatctcaaagaggttc
cagaagaaccccgaggtcatatcggtcgcacgccgggaagtgaccgtcccgcagatcgag
caactctaccttgaggtacggagcaggaacaaactcgagatcctctgccggctgctcgat
atgtatgaccctgaactctcgctcgtcttctcaaacaccaaacgtggcgtcgacgacctg
actgcccacctccaggcccggggctacttcgccgaaggcctccacggagacatgaagcag
tcccagcgggaccgggtgatggcaaaattccgcgcaggaaccatcgatatcctcgtcgcc
accgacgtcgccgcccggggcatcgatgtcgaggacgtcgacctggtcatcaactacgaa
gtcccgcaggatatcgagtactacatccaccgcatcggccggacggcgcgtgccgggcgc
acagggcgggccatcacgttcgtaggcccgagagaatactacaaactcaggacgatccag
gactacacaaagatcaggatcggccgcatcccgctcccgacgccgggagacgtcgaggag
agccggacgcggaaactcgtcgaccgggtgcagcaggtcatcgacgaaggcagcctcgaa
cgctacatgaccctcgctgaacggatcgtatccgaagactacacgtcgcttgaggttgcc
gccgccctcctgaaactggaactcgacgtgggcagccaggacctcccacaggagatcgga
ccagccggggggccggtcctccttgagatcccgcttggaagggagcaccagatcaggccg
aaggatatcgtcggggcactcgcgggcgagaccggaattcccggcaggtccatcggcgcg
atcaacatctacgagacctactccaccgtcgaagtgccccctgacgccgttgaccaggtc
atcgaacggatgaaaggaaagaccatcgcggggatcaggctgccgggcccgatcgagagg
cagtaa
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