Methanoculleus bourgensis MS2: BN140_2420
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Entry
BN140_2420 CDS
T02189
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbg
Methanoculleus bourgensis MS2
Pathway
mbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN140_2420 (rnb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbg03019
]
BN140_2420 (rnb)
03016 Transfer RNA biogenesis [BR:
mbg03016
]
BN140_2420 (rnb)
Enzymes [BR:
mbg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BN140_2420 (rnb)
Messenger RNA biogenesis [BR:
mbg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN140_2420 (rnb)
Transfer RNA biogenesis [BR:
mbg03016
]
Prokaryotic type
tRNA degradation factors
BN140_2420 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-GeneID:
13354401
NCBI-ProteinID:
CCJ37343
UniProt:
I7JAT3
LinkDB
All DBs
Position
complement(2578849..2580345)
Genome browser
AA seq
498 aa
AA seq
DB search
MPPGKSLTEMQNYPHVDLNAIAWAAMDQYGFIPAFPAPVVREVGALAAKVIPGTPGDPCD
LRSLLWSSIDNHDSRDLDQIEVCEERPNGEIRVRVAIADVDLYVPKGSETDRHAGHNGTS
VYTGVETFPMLPDRLSAGLTSLLPGQDHMAIVIEYTVLPDGSTRPGDIYRAIVRNRAKLV
YEEVGDWLEGTASIPRTVGETPGLAEQVLLQHEAAMRMKKRRTEQGALALETIEAEPVVA
DGRVLGLVVQQQNLARCLIEEFMVAANGSITAFLGDAGLPMIHRVVRTPKNWDGIVREAA
EHGEALPATPDAEALTRFLIRQKAADPDRFPDLSLTVVKLMGAGEYVAFRPGDEPVGHFA
LAVTDYTHGTAPNRRYVDLIIQRLIKSVIDGGRYPPYAPSELDDLALRMTDREKASQKVE
RFVRKAAAAVLLRDRIGDSFAAFVTGASEKGTYVRLIDPPAEGRVVLGEGGLRVGQRVRV
RLMATDPYRGFIDFEHTE
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcccccaggtaaatctctcacagagatgcagaactatccccatgtcgacctgaacgcc
atcgcatgggcagcgatggatcagtacggcttcatcccggcattcccggcgcccgtcgtt
cgggaagtcggcgctcttgccgcgaaagtaatcccgggcaccccaggcgacccctgcgat
ctccggtcgctcctctggtcgtcgatcgataaccatgattcacgggacctcgaccagatc
gaagtctgcgaagaaaggccgaacggagagatccgggttcgggttgcgatcgccgacgtc
gacctctacgttcctaagggatcagagacagaccggcacgccggccataacgggacctcg
gtctacactggcgtcgagaccttcccgatgctccccgaccgcctctctgcgggcctcacc
tcgctcctgcccggccaggaccacatggcgatcgtcatcgagtacactgtcctcccggat
gggagcacaaggcccggagacatctaccgggcgatcgtcaggaaccgggcaaaactcgtc
tacgaggaggtcggcgactggctggaggggaccgcctccatccccaggacggtcggggag
acaccgggcctcgcggagcaggttctcctccaacatgaggctgccatgcgcatgaagaag
cgccggacagaacagggagcgcttgccctcgagacgatcgaggcagaaccggtcgtggcg
gacggccgggtcctgggtctcgtcgtccagcagcagaacctcgcgcgatgcctgatcgag
gagttcatggtcgcggccaacggcagcataaccgcattcttaggtgacgccggtcttccc
atgatccaccgggtcgtccgcacaccaaagaactgggatggtatcgtgagagaggcggcg
gaacacggcgaggccctgcccgctacaccggacgcggaggcgctcacccggttcctcatc
cggcagaaggcggccgaccccgaccgcttccccgacctctccctgaccgtggtgaaactg
atgggagcaggtgagtacgtggcgttccggccgggcgacgagccggtcggccacttcgcc
ctcgccgtcaccgactacacccacggcaccgccccgaaccggcgctacgtcgacctcatc
atccagcgattgattaaatcggtcatcgacggagggcgctaccctccctatgccccctcc
gaactcgacgacctcgccctccggatgaccgaccgcgagaaggcgtcccagaaggtcgag
cgattcgtcaggaaggctgcggccgcggtcctgctccgggataggataggcgactcgttt
gcggcgttcgtcaccggtgcctcagagaaggggacgtacgtcaggctgatcgacccgccg
gccgaaggaagggtcgtgctgggcgaggggggtctgcgggtcggccagagggtgcgtgtc
cggctgatggcgaccgacccgtacaggggcttcatcgacttcgagcataccgaatga
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