Microbacterium binotii: LXM64_02455
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Entry
LXM64_02455 CDS
T08238
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mbin
Microbacterium binotii
Pathway
mbin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LXM64_02455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbin03021
]
LXM64_02455 (rpoC)
03400 DNA repair and recombination proteins [BR:
mbin03400
]
LXM64_02455 (rpoC)
Enzymes [BR:
mbin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LXM64_02455 (rpoC)
Transcription machinery [BR:
mbin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LXM64_02455 (rpoC)
DNA repair and recombination proteins [BR:
mbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LXM64_02455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF1690
Motif
Other DBs
NCBI-ProteinID:
UIN31093
LinkDB
All DBs
Position
484803..488678
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDQIRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEGRHRDLPTHENNLRLEIKNLGDRRDARVAARLAALEEE
LATLEAEDAKADAKKKAKDAAEKEMALIRKRGDEQIAKLERVWEEFRSLEVGALKPEDEI
FNELVDRFGQYFEAHMGAESIKRRLESFDLAAEADSLRLQISEGKGQRKIRAIKRLKVVN
SFLSTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGAVGEGR
VFGSVGEAILAKDEGTLDLQAKVRIRVPGLTFLEGEAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAASLDRIKDAGFYWATRSGVTVALSDVL
TPPNKAEIIAGYEKQAAKVQSQYEKGLTTDAERRQELIKIWTAATDEVQAAMKSHFPADN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIARPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCATTKGLELPIAAAGADGVLIKDANVE
NSVFARTLAADVVSPSGEVLAEAGSDVGDVLINRLVEGGVTSIKVRSVLTCDSAVGVCAK
CYGRSLATGKVVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASAEDITQGLPRVQELF
EARTPKGSSPIAEADGRITIEETEKQKKVILTPDNGDEPHVYPVLKRATLLVEDGQRVEV
GQPLQVGTLDPKEIMRVMGAREVQKYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTTLLPGEMVDSRRFIDINRASVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLSKYRNVTVEATEEAKSERYPNRI
FASDGAYSDSDLSYVDFDSFSTDDFTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaatccaccactttcgaccagatccgcatcgggctggccacggccgacgacatc
cgtcgttggtccttcggcgaggtcaagaagcccgagacgatcaactaccgcaccctgaag
cccgagaaggacggtctgttcggcgagcagatcttcggaccctcgcgcgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagagctccgtccgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacccacatctggtacttcaagggcgtcccctcgcgcttgggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatctccgtcgat
gaggagggccgccaccgcgacctccccacccacgagaacaacctgcgtctcgagatcaag
aacctcggcgaccgccgcgacgcccgtgtggctgctcgcctggcggccctcgaggaggag
ctcgcgactctcgaggccgaggacgccaaggccgacgccaagaagaaggccaaggatgcg
gccgagaaggagatggctctcatccgcaagcgcggtgacgagcagatcgccaagcttgag
cgcgtctgggaggagttccgctccctcgaggtcggcgccctgaagcccgaggacgagatc
ttcaacgagctcgtcgaccgcttcggtcagtacttcgaggcccacatgggcgcggagtca
atcaagcgccgtctggagagcttcgacctggccgccgaggccgacagcctgcgcctgcag
atctcagagggcaagggccagcgcaagatccgtgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgtcgaccggtatgtcgccggcgtcgatggtcctggacgtcgtcccggtcatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgccaccagcgacctg
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgtcttcgccgtctgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggtcgtcgtggtcgcccggtcacgggcaccggcaaccgcgccctcaag
tccctcagcgacatgctgaagggtaagcagggtcggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctcaagctgcaccag
tgtggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggccgcgaagcgcgccgtcgagcgtacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgcccggtgctcctcaaccgt
gctcccacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgccgccttcaacgcggacttcgacggtgaccag
atggctgtgcacctgccgctgtcggtcgaggcgcaggccgaggcccgcatcctcatgctc
gcctcgaacaacatcctgaagccgtcggacggccgtccggtcaccctgccctcgcaggac
atgatcatcggtctccaccacctgaccacggtcaaggagggtgccgtcggtgagggccgc
gtgttcggttcggtcggtgaggcgatcctggccaaggacgagggcaccctcgacctgcag
gccaaggtccgcatccgcgttcccggtctgaccttcctcgagggcgaagcccccgagggc
tacgagcgccacggtctcgtcgacgcctcgctcggtcaggcgatcttcaacgacaccctt
cccaagggctacccgttcgtgcgcgaacaggccgacaagggcaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaaggtcgaggtcgccgcgtccctggaccgcatcaag
gacgccggcttctactgggccacgcgttcgggtgtgaccgttgcgctcagcgacgtgctg
accccgccgaacaaggcggagatcatcgcgggctacgagaagcaggccgcgaaggtccag
tcccagtacgagaagggcctcacgaccgacgccgagcgtcgtcaggagctcatcaagatc
tggacggctgcgaccgacgaggtccaggcggccatgaagagccacttcccggccgacaac
accatcaaccggatggtgagctcgggcgcccgtggtaactggctgcagatccgcaacatc
gcgggtatgcgtggtctggtgaacaacccgaagggtgagatcatcgcccgcccgatcatc
tcctcgtaccgcgaggggctgagcgtggccgagtacttcatcgcgacccacggtgcccgt
aagggtctcgccgacaccgctctgcgtaccgccgactcgggttacctgacgcgtcgactc
gtcgacgtgtcgcaggacgtcatcatccgcgaggaggactgcgccacgaccaagggtctg
gagctgcccatcgccgccgcgggtgccgacggggtgctcatcaaggacgccaacgtcgag
aactcggtgttcgcccgtacgctcgccgcggacgtggtcagcccgagcggtgaggttctc
gccgaggccggttcggatgtgggcgacgtgctcatcaaccgcctggtcgagggcggcgtc
acctccatcaaggtgcgctcggtcctgacctgcgactccgctgtgggtgtgtgcgcgaag
tgctacggccgctcgctcgcgaccggcaaggtcgtcgacatcggcgaggccgtcggcatc
atcgcggcccagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacc
ggtggttcggcatccgctgaggacatcacgcagggtctgccccgcgtgcaggagctcttc
gaggcgcgtacccccaagggttcctcgcccatcgcggaggccgacggtcgcatcacgatc
gaagagaccgagaagcagaagaaggtcatcctcacgccggacaacggtgacgagccgcac
gtctaccccgtgctcaagcgcgccaccctgctcgtcgaggacggccagcgcgtcgaggtc
ggtcagcccctccaggtcggcacgctcgacccgaaggagatcatgcgcgtcatgggcgcc
cgcgaggtgcagaagtacctcgtcggcggtgtccagggcgtgtaccggtcgcagggtgtc
ccgatccacgacaagcacatcgaggtcatcgtccgccagatgctgcgcaaggtcaccgtc
gtcgaccacggcgacaccacgctgctgcccggcgagatggtcgactcgcgtcgcttcatc
gacatcaaccgtgcatccgtcgccgagggcaagcgccccgcgtcaggccgcccggagctg
atgggtatcacgaaggcctcgctcgcgaccgagtcgtggctgtcggccgcttccttccag
gagacgacccgcgttctgacgcaggccgcgatggagggcaagagcgacccgctcgtgggc
ctgaaggagaacgtgatcatcggaaagctgatccccgcggggaccggcctgtcgaagtac
cgcaacgtcacggtcgaggcgaccgaagaggccaagagcgagcggtaccccaaccgcatc
ttcgcctccgacggtgcgtacagcgactccgacctgagctacgtcgacttcgacagcttc
tcgacggacgacttcacgcccgggacctacaactga
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