Candidatus Izimoplasma sp. HR1: KQ51_00943
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Entry
KQ51_00943 CDS
T03291
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbj
Candidatus Izimoplasma sp. HR1
Pathway
mbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ51_00943 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbj03019
]
KQ51_00943 (rnr)
03016 Transfer RNA biogenesis [BR:
mbj03016
]
KQ51_00943 (rnr)
Enzymes [BR:
mbj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KQ51_00943 (rnr)
Messenger RNA biogenesis [BR:
mbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KQ51_00943 (rnr)
Transfer RNA biogenesis [BR:
mbj03016
]
Prokaryotic type
tRNA degradation factors
KQ51_00943 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AIO18823
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All DBs
Position
960341..962440
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AA seq
699 aa
AA seq
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MKDRIIEYLRSEDNKKATVEELREVFHISSGPDLVLLMKTINELIDQAELIESSRHELTL
IENTNFLVGRLMLKPRGFGFVIPKDPSRNDVYIGKKDINDAMNNDVVLVHIEKYGYGVRQ
EGIIRKVLERKYTHIIGTMMFRNGMGYVISDDKTINTDIIVKKENLNGSQKFDKVRCRIL
NYSLRGKIEATVTDVLGNKNDSGVDILSKILKYNVDPVFSEEVLEAANKFTGVKPEDYKD
RKDLTNEVIITIDGDDAKDFDDAVQVKTLSNGNFFLGVSIADVSHYVTKGSILDKEAYQR
GTSVYLPGRVIPMLPENLSNGVCSLRPDEERLTLTCEMEIDQSGKVVKYEIYPSVIKSNR
RMTYNKINKIFMGDVDLAEEYVDLVGTFYEMRNLAKILKKKRAEFGSINFETDESYITLD
ENGKAIDIQLRDRGISESIIEEFMLKANQVVAEHVHWLNLPFIYRVHDKPTEEKLNRLLS
MASALGYQVKAKNEISNFELQKLVEKVHGTEAEKGINLLMLRSMQKAIYSELNLGHYGLS
FKFYTHFTSPIRRYPDLIVHRLLREYLFKGNQSTEVIDYYNEKMKEIAAQASETERRAVL
LEREVVDMKKAEYISGYINKRFDGIIGSVTSFGLYVSLPNTVEGLVHITQLTDDYYHYDE
SLMLLVGERKKKIYRVGDKVTIQVMNANITDGEVDFKIV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacagaattatagaatatctacgcagtgaagataataaaaaagcaactgttgaa
gaacttcgtgaagtttttcatatttcgtcgggtccagatttagttttattaatgaagaca
attaatgaattaatagatcaggctgagcttattgaaagtagtagacatgaacttacctta
attgaaaatactaacttcttagtaggtagactaatgttaaaaccaagagggtttgggttt
gttatccccaaggacccttcaagaaatgatgtttatataggtaagaaagacataaatgat
gcaatgaataatgacgttgtcttagttcatattgaaaaatatggatatggtgtaagacaa
gaaggaattattagaaaagtattagaaagaaaatatacacatattattggaactatgatg
tttagaaatggtatggggtatgtgattagtgatgataaaactattaataccgatattatt
gtaaaaaaagaaaaccttaatggttctcaaaagtttgataaagttagatgtagaatactt
aactactcattaagagggaaaatagaagcaacagtaactgatgttcttggaaacaagaac
gatagtggtgttgatatcttaagtaagatattaaaatataatgtcgatcctgtatttagt
gaggaagtgcttgaagcggcaaataagttcacaggggttaaacctgaagactacaaagat
agaaaagacttaactaatgaagtaatcatcactattgatggtgatgatgccaaagacttt
gatgacgcagttcaagtgaaaactctttctaatggtaatttcttcttaggtgtaagtatt
gctgacgttagccactatgtgactaaaggaagtatcttagataaagaggcctatcaaaga
ggaactagtgtttatttacccggtagagttatcccaatgttaccagagaatctaagtaac
ggtgtttgttctttacgacctgatgaagaaagactaactcttacatgtgaaatggaaata
gatcaaagtggtaaagtagttaaatatgagatatatccatctgttataaaatctaataga
agaatgacatataataaaatcaataaaatctttatgggtgatgttgatttagctgaggaa
tatgttgatttagttggtacattctatgaaatgagaaacctagccaaaatcttgaaaaag
aaaagagcagagtttggtagtatcaattttgaaacagatgaatcatatattacattagat
gaaaatggtaaagcaatagatattcaattacgtgatagaggaatcagtgagagtatcatt
gaagaatttatgttaaaagcaaatcaggtagttgcagaacatgttcactggttaaattta
ccgtttatatacagggttcatgataaaccgaccgaagagaaacttaatcgtttattatca
atggcaagtgctttaggttatcaagtcaaagctaagaatgaaattagtaattttgaactt
caaaagctagttgaaaaagttcatggaacagaagctgaaaaaggaatcaacttattaatg
cttcgtagtatgcaaaaggcaatctatagcgaactaaacttaggacattacggtctaagc
tttaaattctatactcattttacaagtccaattagacgttatccagacttgattgttcat
cgtttattaagagagtatttgtttaagggaaatcaatcaactgaagtgattgactactat
aatgagaaaatgaaggaaattgcagctcaagcaagtgaaacagaacgacgtgctgttctc
ttagaaagagaagtcgttgatatgaaaaaagctgaatatatatcaggttatattaataaa
agatttgatggtataataggcagtgttacgagttttggactttatgtttcgttaccaaat
actgtagaaggattagttcatatcacccaattaacagatgattattatcactacgatgaa
agtcttatgctgctagttggggaaagaaaaaagaaaatctaccgtgttggagataaagta
acaattcaagtaatgaatgctaatattacagacggagaagttgattttaagatagtttag
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