Candidatus Izimaplasma bacterium HR1: KQ51_01144
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Entry
KQ51_01144 CDS
T03291
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mbj
Candidatus Izimaplasma bacterium HR1
Pathway
mbj03410
Base excision repair
mbj03430
Mismatch repair
mbj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KQ51_01144 (recJ)
03430 Mismatch repair
KQ51_01144 (recJ)
03440 Homologous recombination
KQ51_01144 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbj03400
]
KQ51_01144 (recJ)
DNA repair and recombination proteins [BR:
mbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KQ51_01144 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KQ51_01144 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KQ51_01144 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Toprim
TAT_ubiq
Motif
Other DBs
NCBI-ProteinID:
AIO19021
UniProt:
A0A088T246
LinkDB
All DBs
Position
1179842..1181416
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AA seq
524 aa
AA seq
DB search
MYKWKIRNNSLDQTNLVEEVYKARGIENYQELFSLDEKAFLDPYLINDMDKAVDRIMKAI
KNKEKILVYGDYDVDGITATFVVYDTLKNLGANINYDIPNRFVDGYGLSYSKTFDIINEG
YNLVITVDNGIKSIDEVKYFKENNIDIIITDHHEKEGVLPDAYAILHTSLSKKYTFKPLA
GVGVAFKLSQALIGEEALEYTDIVALGTIADMMPLEGENRAIVNVGLSKLRNSSNVGARS
LVSFLDIINPSVADVQYKIAPRINACGRMKSAKLAVRLFQSENSAVAVQILSEIEETNNK
RKQLTKDLYSESLSTVNHNQPSIIIHSPKMHEGVIGIVASRLANEYSKVTVVLKEDEFTF
KGSIRSYNGVDVIYILNELKDLLIRHGGHQNAAGLEFVKENLNEFKTRFNELIPDAIRDD
IVIAEGIIDIHKLTIEQIIELDKYDLKDTLFVFEDIYPENRYLIKGEHTKLILNGGSEAL
FFNNKNLYSKLYNKNTVTLLGRLDVNYFRGKYKKQIIIDDYYIK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgtataaatggaaaatacgcaacaatagccttgaccaaactaaccttgttgaagaagta
tataaagcaagagggattgagaactatcaagaactattcagtttagatgaaaaagcattc
ctcgatccatatcttattaacgatatggacaaagcagttgaccgtatcatgaaagctatt
aaaaacaaagaaaaaattcttgtttatggtgattatgatgtagatggtatcactgcaaca
tttgtcgtttatgatacattaaaaaacttaggagcaaatatcaattatgatattcccaac
aggtttgttgatgggtatggtttatcatattctaagacatttgacattatcaatgaaggt
tacaatcttgtaataacagttgataacgggataaagagtattgatgaagtgaagtacttc
aaagaaaataatattgacattattattactgatcatcatgaaaaagaaggtgtcttacca
gatgcatacgcaattttacatacttctttatcaaaaaaatataccttcaaacctttggca
ggagtaggtgttgcttttaaactgtctcaagctttaatcggtgaagaagctctagaatat
actgatatagttgcgctcggtacaatcgccgatatgatgcctctagaaggtgaaaataga
gcgatagttaatgttggtttaagtaaattaaggaattcaagtaatgttggagctagaagt
ttagtctcatttttagacattattaatcctagtgtcgctgatgttcaatacaagatagca
ccacgaataaacgcatgtgggcgcatgaaaagtgcaaaactcgcagtaagattattccaa
agtgaaaatagtgctgtcgctgttcaaattcttagtgaaattgaagaaacaaacaataaa
cgaaaacaactaacaaaagacctatattctgaatctctaagcacagtaaaccacaatcaa
ccaagcattatcattcattcacctaaaatgcatgaaggggttattggtattgtagcgtca
cgtttggctaatgagtattcaaaagttactgttgttttaaaagaggatgaattcactttt
aaaggtagtattcgttcttataacggtgtcgatgttatctatatcctaaacgagttaaaa
gatttactaatcagacacggtggacatcaaaatgctgctggtttagaattcgttaaagaa
aacttaaacgaattcaaaacaagattcaacgaattaatccctgacgcaatacgtgatgac
attgtcatagcagaaggaataattgatattcataaactaaccatagagcaaattattgaa
ttagataaatacgacttaaaagataccctatttgtctttgaagatatctatccagagaat
agatatctaatcaaaggagaacatactaaacttatcttaaacggtggatctgaggcttta
ttctttaataataaaaacctttattcaaaactatataataagaatacagtgacattactc
ggaagattagacgtaaattacttccgtggtaaatataaaaagcaaataataatcgacgat
tattatattaaatag
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