Candidatus Izimaplasma bacterium HR1: KQ51_01831
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Entry
KQ51_01831 CDS
T03291
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbj
Candidatus Izimaplasma bacterium HR1
Pathway
mbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ51_01831 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbj03019
]
KQ51_01831 (cshA)
03009 Ribosome biogenesis [BR:
mbj03009
]
KQ51_01831 (cshA)
Enzymes [BR:
mbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQ51_01831 (cshA)
Messenger RNA biogenesis [BR:
mbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQ51_01831 (cshA)
Ribosome biogenesis [BR:
mbj03009
]
Prokaryotic type
rRNA helicases
KQ51_01831 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Hyccin
Motif
Other DBs
NCBI-ProteinID:
AIO19705
UniProt:
A0A088T3V1
LinkDB
All DBs
Position
complement(1857072..1858664)
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AA seq
530 aa
AA seq
DB search
MIYENKHIEKSLTEMGFEDFTEIQAKTIPLLKSGVDIIGHSQTGTGKTAAFTLPILESID
YKSDKIQAIVLCPTRELVVQVKREIDKIGKYIPGLKTVSVYGGEPISKQIGFLKRKPQVI
IGTPGRTIDHINRKLIRLGNIKFCVLDEADEMLKMGFKEDIETILEATNPERQTVLFSAT
MPKTIINISKKYMRDAQVVSVVTEEQSNKDITQYYYQVSDKNKVEAVGRLLNVYNPKLTL
IFCNTKRKVDDVTRELTKKGYNVDKIHGDLQQTARLHVLNKFHNGVLDILVATDVAARGL
DIKNVEAVINYDTPEKAEYYVHRIGRTGRIGNKGYSFTLVSKREVSRLSSIFSFTKADIK
KRNIPTPEKVIRVKQEKQIEEIQNIINTENSDAYFEIAYNLLQNNEPEKVVIALLNKLEK
RDNSETIRGDINEDFKKGSTRTRSRDGRKKNNQVRFHLNLGTGSGLAPKGLVELISKRTN
LQSRDIDDVFLRRGFSYFSTHEKHLDKVMKNMKNFNYSGKRASIQIANDK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatttatgaaaataaacatatagagaaatcattaacagaaatgggatttgaagacttt
acggaaatacaagccaaaacaattcccttattaaaatcaggtgtcgatataattggacac
tcacaaacaggtaccggtaaaacagccgcttttacattaccgatactagaatcgattgat
tacaagagtgataaaattcaagcaatcgttttatgtccaacacgagaattagtagtacaa
gttaaaagggaaattgataaaattgggaaatatattccaggtctaaaaacagtttcagtt
tatggtggagagccaatctcaaaacaaattggattcttaaaaagaaaaccacaagtaatt
attggtaccccaggtcgtacaattgatcatatcaaccgtaagttaatccgtttaggtaat
atcaagttttgtgttttagatgaagctgatgaaatgttaaaaatgggcttcaaagaagac
attgagactattttagaagctacaaaccctgaaagacaaacagtattatttagtgcaact
atgcctaaaacaattataaatatctcaaaaaaatacatgagagatgctcaagtagtaagt
gttgttactgaagagcaatctaacaaggatattacacaatattactaccaagtttcagat
aaaaacaaagttgaagcagtaggtagattactaaatgtatataatccaaaattaactcta
attttctgtaacacaaaacgtaaagttgatgacgttactagagaattaactaaaaaaggt
tataacgttgataaaatccatggtgatttacagcaaacagctcgtttacacgttttaaat
aaattccataatggagtactagatattttagttgcaactgatgttgctgctagaggttta
gatattaaaaacgttgaagctgtaattaactatgatacacctgaaaaagctgagtactat
gttcatagaattggtcgtacaggacgtattgggaacaaagggtattcatttacattagtt
agtaagagagaagtctcaagactaagtagtatattttctttcactaaagcagatatcaag
aaaagaaatatcccaactcctgaaaaagtgattagagtaaaacaagaaaaacaaatcgaa
gaaattcaaaatatcataaacacagaaaatagtgatgcatatttcgaaatagcatataat
ttattacaaaacaatgaacctgaaaaagtagtaattgctttattaaataaattagaaaaa
agagataattcagaaactattcgtggagatatcaatgaagacttcaaaaaaggttcaaca
agaacaagatctagagatggtagaaagaaaaacaatcaagttcgtttccatcttaattta
ggtactggtagtggattagcgcctaaaggattagttgaattaatctcaaaacgtactaat
cttcaatcaagagatattgatgatgtattcctaagaagaggattttcatacttcagtact
catgaaaaacacttagataaagtaatgaaaaacatgaaaaactttaactacagtggaaaa
agagctagtattcaaatcgcaaacgataaataa
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