Moraxella bovoculi: AAX09_04345
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Entry
AAX09_04345 CDS
T04324
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbl
Moraxella bovoculi
Pathway
mbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAX09_04345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbl03400
]
AAX09_04345
Enzymes [BR:
mbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAX09_04345
DNA repair and recombination proteins [BR:
mbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAX09_04345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AKG19758
LinkDB
All DBs
Position
969848..973375
Genome browser
AA seq
1175 aa
AA seq
DB search
MHTPSFTPNLHTHFTAQADASFALWLATLAKDSTDLTLVICQSQSELQRLADELHFFGIS
AHVFADYETLVYDNLSVHQDIISERIDLLTHMPTRGVLLVSVQTLMQKITPPSYLLGRFF
DLNVGDTFDIEHERERLAKAGYKAVDNVYMAGEFAVRGSIVDIFAVGQALPFRLELFDDE
IETIKFFNPDTQRTVTDEELDKLKKDGVFDDKTAPISPKVASFRLLPAREFDLDDKETFR
QNFASLFPNASARKVEFYNDVMNGIQPSGVEYYAPLFFDLHEWQAAGTLFHYLPKNTLVV
CDDNLSAHHHNFWEQVNARYHSRAFDKDVPILPPDYLYLPSNEFFQALKVYPRAVLGNKE
NSLSLFRQFTAHTVPNLPINHQKDEPLGEFLDFVGTCDEPILLVCESAGRREIILELLKG
KLDSDTVADFGEFLANLDKFNQKIALTVAPIERGLWLKNKQNQGFCVISETQIFGRVVAT
TKRKRQNALSQAFLIKSVSEMTEGSLVVHLSYGIGRYQGLVVLDVGEGEQEFIHIKYADD
ANVYVPITNLALIGRYSGTDSEAVQLSKLGSGKWDKARQKTLTDIYDVAAELLNVQARRN
AKQGISFDIDMASYELFASGFAYDETPDQQSAIEAVMFDMRQTKPMDRLICGDVGFGKTE
VAMRSAFIAVQAGYQVAVLVPTTLLAGQHEDSFKDRFADWAIKIESLSRFVGKKAQDKVL
ADLADGKVDIVIGTHRILQDDVKFKNLGLMIIDEEHRFGVRHKEKIKAMQADVDTLTMTA
TPIPRTLNMALSGMQDISIIATPPARRLAIKTFVAEKNEQTTKDAILREILRGGQVYYLH
NDVASIDTAAENLSELIPEVRVGVAHGQMAEKELHDVMSDFYHKKTNVLVASTIIETGID
VPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYCYLFVPSIKGLTADAKKRLDAISRA
NTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATKAIKSGNTPSLAT
PLDLVSDINIHASALIPSDYLADVHERLLCYKRIANAETVDELNEMRAEMIDRFGAMPTA
LANLFLVHKMRVQSIPLGISRIDVTAHGLSMEFKADTPVDGLAIIKLIQSNDGYRMNGAT
GLKYTFKDEKDVVGRTNAVFELLSYLSGNSSKDKS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
attcacacgcctagttttacacccaacctccacacccactttactgcccaagcggacgca
agttttgcattgtggcttgccactcttgccaaagacagcacggatttgaccttagtcatt
tgccaatcccaaagcgaattgcaacgccttgccgatgagctgcatttttttggcatatcc
gcccatgtgtttgccgattatgagacgcttgtttatgacaatctgtcggtacaccaagac
atcatctccgagcggattgaccttttgacgcatatgccgacaaggggcgtgctactggtg
agcgtgcagacactcatgcaaaaaatcacaccgccaagctatcttttggggcggtttttt
gatctgaatgtaggcgatacctttgatatagagcatgagcgtgaacgccttgccaaggcg
ggctacaaggcggtggataacgtctatatggcgggcgaatttgccgtgcgtggaagtatt
gtggatatttttgcggtggggcaagccttgccgtttcgtttggaattatttgacgatgaa
atagaaacgattaaattttttaatcctgatactcagcgaactgttaccgatgaagagctt
gataagctcaaaaaagacggcgtatttgacgacaaaaccgccccaatatcgcccaaagtg
gcaagttttcgtctactgcctgcccgtgaatttgacttagacgacaaagagacgttccgc
cagaattttgccagcctattccccaatgcgtccgctcgcaaagtggaattttataatgac
gttatgaatggcatacagccgtctggggtggagtattacgcaccgctattttttgatttg
catgaatggcaggcggcaggcacgctgtttcattatttgcccaaaaatacactggttgtc
tgtgatgacaatttgtccgctcatcatcacaacttttgggagcaggtaaacgcacgctat
cattctcgggcgtttgataaggacgtgccaatcctgccccctgattatttatatttgcca
agcaatgaattttttcaagccttaaaagtgtatccaagggcggtgcttggcaataaagaa
aattcactttccttatttcgccaatttaccgcccataccgtccccaatttgccaatcaat
catcaaaaagacgaacccttgggcgagtttttggactttgtggggacgtgtgatgagccg
attttattggtgtgtgaaagtgcaggtcgccgtgagattattttagaattattaaaaggc
aaacttgacagcgacacggtggcggattttggtgagtttttggcaaatttggataaattt
aaccaaaaaattgccttaactgttgccccgatagagcgtggattatggctaaaaaataag
caaaatcaaggcttttgtgtcattagcgaaactcaaatttttgggcgagtggtcgccacc
accaaacgcaaacgccaaaatgccttatcgcaagcctttttgataaagtcggtaagcgag
atgaccgaggggtcgcttgtcgtgcatttgtcctatggcattggacggtatcaggggctt
gtcgtgcttgacgtgggtgagggcgagcaggaatttatccatatcaaatatgccgatgat
gccaacgtctatgtgccgattaccaatcttgctttaattgggcggtatagcggtaccgat
agcgaggcggtgcagttgtcaaaacttggctcgggcaagtgggacaaagcacgccaaaag
accttgaccgacatttatgacgtggcggcggagctgttgaatgtgcaggctcgccgtaac
gccaagcagggcattagttttgacattgacatggcaagttatgagctgtttgccagtggg
tttgcctatgacgaaacgcctgaccagcaaagtgccattgaagcggtgatgtttgacatg
agacagactaagcccatggataggcttatctgtggtgatgtgggttttggcaagacggag
gtcgccatgcggtcagcattcattgcggtgcaggcaggttatcaggtggcggtgcttgtg
ccaactacgctactggcggggcaacacgaggacagttttaaggacagatttgccgattgg
gcgattaagattgaaagtctgtctcgttttgtcggtaaaaaagcccaagataaagtgctt
gctgacctagcagacggtaaggtggatattgtcatcggtacgcaccgaattttgcaagat
gatgttaaatttaaaaatctaggcttgatgataattgacgaagagcatcgttttggcgta
cgccataaagaaaaaatcaaagccatgcaagcggacgtggatacgctcacgatgaccgct
acgcccattccacgcacgctcaatatggcattatcgggtatgcaggacatttctatcatt
gccacaccgccagccagaaggcttgccattaaaacttttgtcgctgaaaaaaacgagcag
acaaccaaagatgcgattttgcgtgagattttgcgtggggggcaggtgtattatttgcac
aatgacgtggcgagcattgacacggcggcggagaacttgtccgagcttatccctgaggtg
cgtgtgggcgtggctcatgggcaaatggcggaaaaagaactccacgatgtcatgagtgat
ttttatcacaaaaaaacgaacgtgcttgttgccagtaccattattgagacaggcattgac
gtgccaaatgccaatacgattatcatcaaccgagccgataagtttggacttgcccagttg
caccaactgcgtgggcgagtggggcggtctcatcatcaggcgtattgttatttgtttgtg
ccgtccattaaggggctgacggctgatgccaaaaaacgccttgatgccattagccgagcc
aatacgcttggggcagggtttatgctggcgagcgaagatttggagattcgtggggcgggc
gagattttgggcaaggagcagtcgggcaatatgcagaccattggttttgggctgtatatg
gatatgctagaacgtgccacaaaggcgataaaatcgggcaatacgccaagtctagcgacc
ccgcttgatttggtgagtgatattaacattcatgcgtctgccttgataccgagcgattat
ttggcggacgtgcatgagaggcttttgtgctataagcgtatcgccaatgccgagacggtg
gacgagctaaatgagatgcgtgccgagatgatagaccgttttggggcgatgccaaccgcc
cttgccaatttgtttttggtgcacaaaatgcgagtgcaaagcataccgcttggcattagc
agaattgacgtaactgctcatgggcttagtatggaatttaaagcggatacgcctgtggac
ggtttggcgattatcaagctcattcagtctaatgacggctatcgtatgaacggggcgaca
gggctaaaatacacctttaaagatgaaaaagacgtggtggggcgaaccaatgcggtgttt
gagctattaagttatctgagtggtaattcatcaaaagataaaagctag
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