Mycobacterium tuberculosis variant bovis BCG Mexico: BCGMEX_1049
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Entry
BCGMEX_1049 CDS
T01727
Symbol
mfd
Name
(GenBank) Putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbm
Mycobacterium tuberculosis variant bovis BCG Mexico
Pathway
mbm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCGMEX_1049 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbm03400
]
BCGMEX_1049 (mfd)
Enzymes [BR:
mbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCGMEX_1049 (mfd)
DNA repair and recombination proteins [BR:
mbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCGMEX_1049 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
LSDAT_prok
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AET18333
LinkDB
All DBs
Position
1139731..1143435
Genome browser
AA seq
1234 aa
AA seq
DB search
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH
PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF
ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG
HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL
GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA
HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP
GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER
TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN
TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER
MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET
TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF
DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG
YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV
RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT
ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgcctgctcagataccccgatcgcggggctcgtcgaattggcg
ctgagcgcgccgacattccaacagctcatgcagcgcgccgggggtcgacccgacgaattg
acgctcatcgcgccggccagcgcgcggctgttggtcgccagtgcgctggctcggcagggg
ccattgctggtggtcaccgccaccgggcgggaagccgacgacctggccgccgaactgcgt
ggtgtgttcggggatgcggtggcgttgttgccgtcctgggagacactgccgcacgaacgg
ctctcacccggtgttgacaccgtcggcactcgcctgatggcgctgcgccggctggcccac
cccgacgatgcccagctgggcccaccgctgggggtagtggtgacctcggtgcgctcgctg
ctgcagcccatgacgccgcagctgggcatgatggagcccctcacgctgaccgttggcgac
gaatcccccttcgacggcgtggtggcgcggctggtcgagctggcatatacccgggtggat
atggtcggccggcgcggcgagttcgctgtgcgcggcgggattctggacatctttgccccg
acggccgaacatccggtgcgggtcgagttctggggcgacgagatcaccgagatgcggatg
ttctcggtagccgaccagcgctcgattccggagatcgacattcacacactggttgccttc
gcctgccgtgaactgctgctgagcgaggacgtgcgggcgcgggccgcccaactggccgca
cggcatcccgcggccgagagcaccgtcaccggcagtgcttccgacatgctggcgaagctc
gccgagggcatcgcggtcgacggcatggaggcggtgttgccggtgctctggtccgacggg
cacgcgttgctgaccgatcagctgcccgacggcacgccggtgttggtgtgcgacccggaa
aaggtgcgcacccgcgccgcggatctgatcaggactggccgtgaattcctggaagcctcg
tggtcggtcgcggcgctgggaactgcagaaaatcaagcccccgtcgacgtcgaacaactg
ggtgggtcggggttcgtcgaactggaccaggtgcgggccgcggcggcccgaacgggtcat
ccgtggtggacgttgagccaattgtccgacgagtcggcgatcgagttggacgttcgggcc
gcgccgtcggcgcgcgggcaccagcgtgacatcgacgaaatcttcgcgatgctacgtgcc
cacatcgcgaccggcgggtacgccgcgctggtcgcgccgggcaccggaaccgcacaccgc
gtggtggaacggctgtccgagtccgacacccccgcggggatgctcgatcccggccaggcg
cccaagccgggagtcgtcggggtgctccagggcccgctgcgtgacggcgtcatcattccc
ggcgccaacctggtcgtcatcaccgagaccgatttgaccggcagccgggtcagcgccgcc
gagggcaagcggctggcggccaagcggcgcaacatcgtcgacccgctggcgctgacggcc
ggtgacctggtggtgcacgatcagcacggcatcggccggttcgtggagatggtcgagcgc
acggtcgggggcgcccgccgggagtatctggtgctggagtatgcctcggccaagaggggt
ggcggggcgaaaaatactgacaagctctatgtcccgatggattcgctggaccagctgtcg
cggtatgtcggcgggcaggcgccggcgctgagccggctgggcggcagcgactgggccaac
accaagaccaaggcgcgccgcgcggtgcgcgagatcgcgggcgagctggtctcgctgtac
gccaaacggcaggccagccccgggcatgcgttctcgccggacacgccgtggcaggccgag
ctggaggacgcgttcggcttcaccgagaccgtggaccagctcaccgccatcgaagaggtc
aaggcggacatggaaaagccgatcccgatggaccgggtgatctgcggcgatgtcggctac
ggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtccaagacggtaaacaggtc
gcggtgctggtgcccaccacgctgctggccgaccagcatctgcagacgttcggcgagcga
atgtccggattcccggtgaccatcaagggtctgtcgcggttcaccgacgccgccgagtcc
cgcgccgtgatcgacggcctggccgacgggtcggtggacatcgtgatcggcacccatcgg
ctgctgcagaccggggtgcgctggaaggatctgggcctggtggtggtcgacgaggagcag
cggttcggcgtcgagcacaaggagcacatcaagtcactgcgcacccatgtcgacgtgctg
accatgagcgccaccccgatcccgcgcacgttggagatgagcctggccgggattcgcgag
atgtcgaccatcctgacgccgcccgaggagcgctacccggtgctgacctacgtcggaccg
cacgacgacaagcagatcgccgcggcgctgcgccgggagctgctgcgcgacgggcaggcg
ttctacgtgcacaaccgggtcagctcgatcgacgcggccgccgcccgggtgcgtgagctg
gtgcccgaggcgcgggtggtggtcgcgcacgggcagatgcccgaggacctgttggagacc
accgtgcaacggttctggaaccgcgagcatgacatcctggtttgcaccaccatcgtggag
accggcctggacatctccaacgccaacactttgatcgtcgagcgcgccgataccttcggg
ctgtcccagctgcaccagctgcgtggccgggtgggccgcagccgggagcgcggctacgcc
tatttcctctatccaccgcaggtgccgctgaccgagaccgcttacgaccggttggcgacg
atcgcgcagaacaatgagctgggcgcgggcatggccgtggcgttgaaggacctagagatc
cgcggtgccggcaacgtgctcggcatcgagcagtccggacacgtcgccggcgtcggattc
gacctgtacgtgcggttggtcggcgaggccctggagacgtaccgggacgcgtaccgggcg
gccgccgacggccaaaccgtgaggaccgccgaagaacccaaggatgtgcgaatcgacctg
cccgttgacgcgcacctgccaccggactacatcgccagtgatcggctgcggctggagggc
taccggcggctggcggccgcctcctctgatcgcgaagtggcggccgttgtggacgagcta
accgatcggtatggggccctgccggagccggcccggcggctggcggcggtggcacggctg
cggctgctgtgccgtggctccggcatcaccgacgtgacggcggcgtcggcagcgaccgtg
cggctgtccccgttgacgctgccggactccgcccaggtgcggctgaagcgaatgtatccc
ggagcgcactaccgtgccacgacggccaccgtgcaggttcccattccgcgagccggtggc
ctcggcgcgccgcgaatccgcgacgtcgagctggttcagatggtggccgatttgataacc
gcgctcgctgggaaaccgcgccagcatattggtataacgaaccctagcccgccaggcgaa
gacggccgtggtcgcaacacgacgattaaggagcgacaaccgtga
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integrated database retrieval system
