Methanoregula boonei: Mboo_0649
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Entry
Mboo_0649 CDS
T00578
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbn
Methanoregula boonei
Pathway
mbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mboo_0649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbn03019
]
Mboo_0649
03009 Ribosome biogenesis [BR:
mbn03009
]
Mboo_0649
Enzymes [BR:
mbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mboo_0649
Messenger RNA biogenesis [BR:
mbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mboo_0649
Ribosome biogenesis [BR:
mbn03009
]
Prokaryotic type
rRNA helicases
Mboo_0649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
Cas3-like_C_2
CMS1
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ABS55167
UniProt:
A7I606
LinkDB
All DBs
Position
complement(615196..616794)
Genome browser
AA seq
532 aa
AA seq
DB search
MNTRLQFSDLSLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFG
IPVIENIDASQRVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKA
LANGVHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKR
QTLLFSATLPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCRVID
VVDPQLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDILIA
TDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLREIQ
KYIKVQIPRKPLPTADDVVEQKTKTILEEVRETIQKGGTEPYARIVEQESEGDLTTLEIA
AALLKIRLEQGSDSHTEHAVPKDFGDTGAESGMVRFFLGIGRDHKVAPKDIVGAIAGETG
IPGKYIGAIRILDTYSFVEVPREYAGEVYTIMKERTIRGLSTAIEPAQGRHP
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaagattgcagttttccgatctctccctctcaaaagagatcgcgaaagccata
gaaaatatgggctttgaagagcccacccccatccaggcacttgccattccccttatccag
gccggccgcgatgtgaccgcgcaggcacagaccggtaccggaaagacctccgcgtttggc
atccccgttatagaaaatatcgatgcttcacaacgggtcgtgcaggtcatcgttctgtgc
cccacccgggaactcgccatccagatcgccgaggaattttcccatctcctcgcctacctc
ccaaaaatctccgttctcccggtctatggcggccagcccatagaacgccagctcaaggcc
cttgcaaacggtgtccacattgtgattggcactcccgggcgtgtgatggatcacctcaag
cgccgtaccctctcacttgaccatgtctcgatggttgtgctcgacgaggcggaccagatg
cttgacatgggattccgggacgatatcgagctcattttaaagcgcgtaccccagaaacgc
cagacgcttctcttctctgcaacgctccccaagccgatcatcgagatctcaaaaaggttc
cagaaccgtcccgaatttgtccgggtcgagtaccaggagctcaccgttcctgcgatcgag
cagtcctatattgaagtcagggaccgggacaagctcgattctctctgccgggtgatcgat
gtcgttgacccgcagcttgctatcattttctgcaacacaaaacggggcgcagaagacctt
gccggccgcatccgggcacggggttaccgcgcagaagagctccacggggatatgaaacag
tcccagcgcgaccgggtcatgggagggttccggaagggtaccatcgatatcctgatcgca
accgatgttgctgcgcgcggaatagatgtcgaagatgtggacatggtgatcaactatgat
gtcccgcaggacgttgattactacatccaccggattggcaggacggggagggcaggaaag
agcgggcgggcgatcacctttgttacgtcccgcgatttcaccaagctccgcgagatccag
aaatacataaaagtccagatccccagaaaacccctgcccacggctgacgatgtggtcgag
caaaaaacaaagactatactcgaagaggtacgcgagaccatccagaagggaggtaccgag
ccgtatgcccggattgttgagcaggagagcgaaggggatctcaccacgcttgagatcgct
gcagcccttttaaaaatacgcctggaacagggaagcgattcccataccgagcacgcggtt
ccgaaggatttcggggataccggtgcagaatcaggcatggtaagatttttcctgggtatc
ggccgcgaccacaaggtggcacccaaggatattgtcggggccattgccggggaaacaggt
atcccgggaaaatacatcggcgcaataaggatcctcgatacatattcctttgtcgaagta
ccccgggagtatgcgggtgaggtctatacgattatgaaagagcggacgatccggggactc
tccacggcaatagagccggcacagggccggcacccgtaa
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