Methanoregula boonei: Mboo_1792
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Entry
Mboo_1792 CDS
T00578
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mbn
Methanoregula boonei
Brite
KEGG Orthology (KO) [BR:
mbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbn03016
]
Mboo_1792
Enzymes [BR:
mbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mboo_1792
Transfer RNA biogenesis [BR:
mbn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mboo_1792
Prokaryotic type
tRNA splicing ligases
Mboo_1792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABS56308
UniProt:
A7I997
LinkDB
All DBs
Position
complement(1872687..1874120)
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AA seq
477 aa
AA seq
DB search
MPDGIIRVGTDEWEIPVGYVPGMRVPGRFFLSEALAGLLEPGALQQLANVATLPGIVRYS
LGMPDLHWGYGFPIGGVGAFSLDEGVISPGGVGFDINCGVRLFTTPLVRADIKKPRELIE
SLYRAVPTGVGAKSTAKIPKEALLSMMVKGARWAVETGYGTTRDLTRCEEGGAMNDADIR
AVSEKARARGIPQGGTLGSGNHFLELQEVSEIYDEKAAAAFGVKMGQVCCMIHCGSRGLG
HQVCTDHLKVLETATKRYNIALPDRQLACAPAGSPEGQAYYGAMAAAANYAWANRQMILH
AARKEFVRMFGMDYESMPLVYDVAHNVAKIEEHTVEGRRARLLVHRKGATRSFGPGAPDL
PGDLAAIGQPVIIPGSMGTSSYVLAGTATAMERTFGSTCHGSGRIMSRSQAKKKLTGKEV
ADALLARGIIVRAPNEAAIADEAPDVYKPSSEVVQVVHDAGLSTLVARLTPLGVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacggtataatacgggttggtacggacgaatgggagattccggtcggatatgtt
cctggaatgcgggtgccggggcgatttttcctttcggaggcccttgcgggacttctcgaa
ccgggtgcgttgcagcagctggcaaacgttgccacgctgcctggtatcgtgcggtactcg
cttggcatgccggacctccactggggttacgggtttcccatagggggagtaggggcgttc
tcgctcgatgagggtgttatctctccgggtggggtgggctttgatatcaactgcggggtc
cggctttttacaaccccgcttgtgagagcggatataaaaaagccccgcgaactcattgag
tctctgtaccgtgcggtacctaccggcgtaggcgcaaaaagcactgcaaagatcccaaag
gaagcactcttatcaatgatggtaaaaggggcacgctgggctgtggagacgggatatggg
accacgcgggatctcacccggtgcgaagagggcggcgcgatgaatgatgccgatatccgg
gcagtctcggaaaaagcccgggcccgggggatcccccagggagggacgctcggttcggga
aaccatttccttgaactccaggaagtaagcgagatatatgatgagaaagcagcggcagcc
tttggcgtaaaaatggggcaggtctgctgcatgatacactgcggctcccggggactcggt
caccaggtctgtactgatcatcttaaggtgctggaaaccgccacaaaaagatacaacatc
gctcttcccgaccgccagctggcctgcgccccggccgggtcacctgaagggcaagcctat
tatggtgccatggctgccgcggcgaactatgcctgggcaaaccgccagatgatccttcat
gcggcccgcaaggaatttgtccggatgtttggcatggattacgagagcatgcccctcgta
tatgatgttgcccacaatgtggcaaagatcgaggaacacaccgtggaagggcgccgtgcc
cggcttcttgtgcaccgaaagggtgccacccgatcgttcgggcccggtgctcccgatctc
ccgggagatcttgcggcaataggccagccggttatcatccccgggagcatgggaacctcc
tcgtacgtccttgcagggacagcaacggcaatggaacggacgttcgggagtacctgtcat
gggtcgggccggatcatgagccggtcgcaggcaaaaaagaagctgaccggaaaagaggtg
gcagacgcactccttgcccgtggaatcattgtccgtgcacccaacgaagcagcgattgcc
gatgaagcgccggatgtgtacaagcccagcagcgaggttgtacaggtagttcacgacgcc
ggcctctctacgcttgtggcccggctcaccccccttggggtgatcaagggttga
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