Macrococcoides bohemicum: HT586_10810
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Entry
HT586_10810 CDS
T07164
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mboe
Macrococcoides bohemicum
Pathway
mboe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mboe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HT586_10810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mboe03019
]
HT586_10810
03009 Ribosome biogenesis [BR:
mboe03009
]
HT586_10810
Enzymes [BR:
mboe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HT586_10810
Messenger RNA biogenesis [BR:
mboe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HT586_10810
Ribosome biogenesis [BR:
mboe03009
]
Prokaryotic type
rRNA helicases
HT586_10810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
GerD
Motif
Other DBs
NCBI-ProteinID:
QRN50656
LinkDB
All DBs
Position
complement(2058204..2059721)
Genome browser
AA seq
505 aa
AA seq
DB search
MQKFRDLGISEPTINALEKLGFTEPTPIQTDSIPHTMAGRDVLGQAQTGTGKTGAFGIPL
IEKVRGQEGIKSLILAPTRELAVQVAEQLKAFSRGQGIQVATVFGGMPIDRQIRELKKKP
QIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKEQRQTML
FSATMPRAIQELVQKFMKDPIIVKTMTNVDSNPDIDEHYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKSKN
RTMTALRPPTPGEVMKARELDVKTKVKGWVEKNTEARIESIAQELINEHGDVKLVASLLQ
ELIKSNNDVDVQLTFEKPLGRKGGSGKSYGRGRGGNSGRSGGSRSRSKDGGKDNRRKSFD
RAGKAGASKGGKKPFKARTFADHKK
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttagagacctaggtatcagcgaacctaccataaatgcgctggagaaattg
ggatttacagaacctacaccgattcaaacggatagtatccctcatacgatggcaggccgt
gacgtattaggccaagcgcaaactggtactggtaaaactggtgcttttggaattccttta
attgaaaaagttagaggtcaagaggggatcaaaagtttaattcttgcgcctacacgtgaa
ttagcagtccaggttgctgaacaattaaaagcatttagtcgtggacaagggattcaagta
gcgacagttttcggtggaatgccgattgaccgtcaaatcagagaattaaaaaagaaaccc
caaatcgtagttgggacacctggtcgtgtaatcgatcatttaaaccgtcgtacgttaaaa
actgaagacatcaatacgttaatcttagatgaagcagatgaaatgatgaacatgggattc
atcgatgatatgcgttttatcatggataaattaccgaaagaacagcgtcaaacaatgtta
ttctcagcaacaatgccgagagctattcaagagttagttcaaaagttcatgaaagatcct
atcattgttaagacgatgacaaacgttgattcaaatcctgatatcgacgagcattacaca
atcgttaaagaattagagaagtttgatactttcactaatttcttagatgttcatcaacct
gaactagcaatcgtattcggacgtacaaaacgtcgtgtagatgaattaacgagtgcgtta
atctctaaaggataccgtgcagaaggtttacatggtgacatcacacaagccaaacgttta
gaagttcttaagaaattcaaaaacgaccaaattgacatccttgttgcaacagatgttgct
gcacgtggattagatatttctggcgtatcacatgtttataactttgatattcctcaagat
gttgaaagttatacacaccgtatcggacgtactggtcgtgccggtaaacatggtatggca
atttcattcgttaacccggttgagatggattatatccgtcaaatcgaaaagtctaaaaat
cgtacgatgactgcattacgtccaccaacaccaggtgaagtaatgaaagcccgtgaatta
gatgttaagacgaaagttaaaggatgggttgaaaaaaatactgaagcacgtatcgagtca
atcgctcaggaattaattaatgaacatggtgatgtgaaattagtagcatcattattacaa
gaattaattaaatctaataacgatgtagatgtacaattaacatttgaaaaaccacttggc
cgtaaaggcggaagcggtaaatcttatggtcgtggccgtggtggaaacagcggacgttca
ggtggatctcgtagccgttctaaagatggcggtaaagataaccgtcgtaaatcgttcgac
cgtgctggtaaagcaggtgcttcaaaaggcggaaaaaaaccttttaaagcaagaacattt
gcagaccataaaaaataa
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