Macrococcoides bohemicum: HT586_11695
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Entry
HT586_11695 CDS
T07164
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mboe
Macrococcoides bohemicum
Pathway
mboe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mboe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HT586_11695 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mboe03021
]
HT586_11695 (rpoC)
03400 DNA repair and recombination proteins [BR:
mboe03400
]
HT586_11695 (rpoC)
Enzymes [BR:
mboe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HT586_11695 (rpoC)
Transcription machinery [BR:
mboe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HT586_11695 (rpoC)
DNA repair and recombination proteins [BR:
mboe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HT586_11695 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QRN50830
LinkDB
All DBs
Position
complement(2242095..2245715)
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEEVIYFASYAVIDPGPTGLEKKSLLSEREYREYYDKFPGQFTAKMGAEAIKDLLM
DIDLDGELKSLREELETATGQRLTRAIKRLEVVESFRNSGNDPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEREIATNIKNAKGKIERMEPEIWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERLGTIGEGRIFKDTNEVIMAYVNGYVHLHARIAVQ
AGSFNNPTFTDKQNSQLLITSVGKVIFNEIMPESFPFINEPTLSNLETITPDKYFIDATE
LTEEGLLKYLNEQPLVKPFNKKFLGQIIAEVFNRFHITDTSMMLDRMKDLGFKYSSRAGI
TVGVSDIVVLPDKQDIIGLAEEKVDRVTKQFTRGLITESERYAAVIEIWTKAKDDIQAKL
MNSLDDLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREPDCGTDRGLLVSAIREGSELI
EPFIERLEGRYSRETVRHPETKEILVKVNELITPEISKQIVDAGIEEMHIRSAFTCNSRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRI
QELFEARNPKGQAVISEINGEIIELNVVKDRMQEIKVKGENEVRTYLAPGTARLKVEVGQ
KIARGEVMTEGSIEPKQLLAVAGLNATQSYLLKEVQKVYRMQGVEISDKHVEVMVRQMLR
KVRIIEAGDTKLLPGALVDIHTFTDANREVFKARKHPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSGVEYEKDAPALEQDE
VVVTEN
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataactttcattacatgaagataggtctcgcttcacctgaaaaaatc
cgttcatggagttttggtgaagttaaaaagccagaaacaattaactaccgtacattaaaa
cctgaaagagatggtttattctgtgagaaaattttcggtccaacaaaagactgggaatgt
agctgtggtaaatataaacgtgtacgttacaaaggtatggtctgtgaccgttgtggcgtt
gaagtaacaaaatcaaaagtacgtcgtgaacgtatgggtcatattgaattagctgcacct
gtatcacacatctggtattttaaaggaattccttctcgtatgggattacttttagatatg
tctccgcgttctttagaagaagttatctattttgcttcttacgctgtaattgatcctggt
ccaactggattagagaaaaaatcattattatctgaaagagaataccgtgagtattacgat
aagttccccgggcaattcactgctaagatgggtgctgaagcgattaaagatttattaatg
gacatcgacttagatggagaattaaaatctttacgtgaagaattagaaacagcaacagga
caacgtttaacaagagcaatcaaacgtttagaagttgtggaatcattccgtaattctggt
aatgatccttcttggatgattttagatgttttaccaatcattccacctgaaattcgtcca
atggttcaattagatggtggacgtttcgctacatctgatttaaacgatttatatcgtcgt
gttattaaccgtaacaaccgtttaaaacgtttattagatttaggtgcgcctggtatcatc
gtacaaaacgaaaaacgtatgttacaagaagcagttgatgctttaattgataatggtcgt
cgtggccgtccagttactggaccaggtaatcgtccattaaaatctttatctcatatgtta
aaagggaaacaaggtcgtttccgtcaaaatttacttggtaaacgtgtagactattctggt
cgttcggttatcgtagtaggtcctaacttaaaaatgtatcagtgtggtcttcctaaagaa
atggcacttgaattattcaaaccatttgttatgaaagaacttgttgaacgtgaaattgcg
acaaacattaagaacgctaaaggtaaaatcgagcgtatggaaccagaaatctgggacgtt
ttagaagacgttattcgtgaacacccagttctgttaaaccgtgcaccaacacttcaccgt
ttaggtatccaggcattcgaaccgacattagttgaaggtcgtgcgattcgattacatcca
cttgtaacgactgcatacaatgccgatttcgatggtgaccaaatggccgttcacgtacct
ttatctaaagaagcgcaagctgaagcacgtatgttaatgttagctgcacaaaatatctta
aaccctaaagatggtaaaccagttgttacaccatctcaggatatggtattaggtaactac
tacttaacattagagcgtttaggtacaattggtgaaggtagaatctttaaagatacgaat
gaagttattatggcttatgtcaacgggtatgttcatttacatgcgcgtattgcagttcaa
gctggatcatttaacaatccaacatttactgacaaacaaaatagccaattattaatcact
tctgttggtaaagtaatctttaatgaaattatgcctgaatcattcccgttcattaacgaa
ccaactttatcaaacttagaaacaataacacctgataaatatttcatcgatgcaactgaa
ttaactgaagaaggattattaaaatacttaaacgagcaaccacttgttaaaccatttaat
aaaaaattcttaggtcaaatcattgctgaagtgttcaatagattccatattactgatact
tctatgatgttagatagaatgaaagatttaggatttaaatattcttcacgtgctggtatt
acagtaggtgtatctgacattgtggtattacctgataaacaagatattatcggtttagca
gaagaaaaagtagatagagtaacgaaacagttcacacgtggtttaattactgaaagtgaa
cgttacgcagctgttattgagatttggacgaaagctaaagatgacattcaagcaaaatta
atgaactctttagatgacttgaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcgtctaactttacgcagttagcaggtatgcgtggactgatggccaacccggctgga
cgtatcatcgagttaccaatcaaatcttcattccgtgaaggtttaacagtattagaatac
tttatctctacgcatggtgcgcgtaaaggtcttgccgatacagcacttaaaactgccgat
tcaggttacttaacacgtcgtctagttgacgttgctcaagacgttatcgtacgtgaacct
gattgtggtactgaccgtggattacttgtttcagcgatccgtgaaggttcagaacttatt
gaaccattcattgagcgtttagaaggacgttattctcgtgaaacagtaagacacccagaa
acaaaagaaattcttgttaaagtgaacgaattgattacacctgaaatctcgaaacaaatc
gtggatgcaggtatcgaagaaatgcatatccgttcggcatttacatgtaactcacgtcat
ggggtttgtgaaaaatgttacggtaaaaacttagcaacaggtgaaaaagtagaagttggc
gaagcagttggtacaatcgctgcccaatctatcggtgaacctggtactcagttaacgatg
cgtacattccatacaggtggggttgccggtgccgatattacacaaggtttacctcgtatc
caggaattattcgaagcgcgtaatccgaaaggtcaagctgttatttctgagattaacggt
gagattatcgaattaaacgtagtaaaagatcgtatgcaggaaattaaagttaaaggtgaa
aacgaagtacgtacgtacttagcacctggtactgcaagacttaaagtagaagttggtcaa
aaaatagcacgtggtgaagtaatgactgaaggttctatcgagcctaaacaattattagct
gtagcgggacttaatgcgacacaaagctacttattaaaagaagttcaaaaagtataccgt
atgcaaggggtagaaatctcagataaacacgttgaggtaatggtacgtcaaatgttacgt
aaagttcgtattatcgaagcaggagatacgaaattattaccaggtgcattagttgatatt
catacatttactgatgctaaccgtgaagtatttaaagcgagaaaacacccagcaacagcg
aaacctgtattgcttggtattacgaaagcatctcttgaaacagaaagtttcttatctgca
gcatcgttccaggaaacaacacgtgtgttaactgatgcggcgatcaaaggtaaacgtgat
gacttattaggacttaaagaaaacgttattatcggtaagttaatcccagctggtacaggt
atgagacgttatagtggcgttgaatacgaaaaagatgcaccagcattagagcaagatgaa
gtagtagtaactgaaaactaa
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