Mycolicibacterium boenickei: MBOE_10900
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Entry
MBOE_10900 CDS
T07414
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mbok
Mycolicibacterium boenickei
Brite
KEGG Orthology (KO) [BR:
mbok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbok03019
]
MBOE_10900 (hrpA)
Enzymes [BR:
mbok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MBOE_10900 (hrpA)
Messenger RNA biogenesis [BR:
mbok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MBOE_10900 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
NACHT
nSTAND3
ABC_tran
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BBX89441
LinkDB
All DBs
Position
complement(1168814..1172695)
Genome browser
AA seq
1293 aa
AA seq
DB search
MSEPSVAELRSRLDGLTIRDADRLRRRLRNLRGGDTAKIAEQIATAEGLVLTRQAAVPAI
TYPDLPVSEHRDELAKAISENQVVVVAGATGSGKTTQLPKICLDLGRGIRGTIGHTQPRR
LAARTVAQRIADELGTPLGEAVGYTVRFTDQASDSTLIKLMTDGILLAEIQRDRRLLRYD
TLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAAHFNDAPIVEVSGR
TYPVEIRYRPLEVPAPTSDDEDPDDPDHEIVRTELRDPTEAIVDAVRELEAEPLGDVLVF
LSGEREIRDTAEALKDLRNTEVLPLYARLPTAEQQKVFQPSRSGRRIVLATNVAETSLTV
PGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPGVCIRLYSEEDF
ESRPRYTDPEILRTNLAAVILQMAALQLGDIAEFPFLDPPDARSIRDGVQLLQELGAFDT
AGALTDIGRRLARLPLDPRVGRMILQADTEGCVREVLVLAAALSIPDPRERPTDKEEAAR
QKHARFADEHSDFISYLNLWNYLREQRNQRSGNALRRMCREEFLHYLRIREWQDLTGQLR
SIARDIGIRESDEAAEPASIHAALTAGLLSHVGLREGEGRDYQGARNSKFVLAPGSVLTK
KPPRWIVVADLVETSRLFGRIAAKVEPEAIERVAGHLVQRNYSEPHWEARRGAVVAFERV
TLYGLPLVPRRKIGYTQIDPELCRELFIRHALVEGDWQTRHHFFRDNARLRAELEEIEER
ARRRDLLVGDDDIYALYDARIPADIVSARHFDAWWKKQRHKTPDLLTFTRDDLLRSEDGA
DNPDTWQTGDLELPLTYRFEPGAADDGVTVHVPVGVLARLGGDGFAWQVPALREELVTAL
IKSLPKDLRRNFVPAPDTARAILGDIDPSAGSLLDEVQRELRRRSGILVPIDAFDLSKIP
DHLRMTFAVEAADGKEVARGKDIDALREQLAVPVAQAVADALGGDLDRTGLKAWPEDLDE
LPRTVESVSGGHTVRGYPAFVDNGNSVGIKVFANPAEQAAAMRPGLRRLLRLTAPSPVKA
IERGLSTRTRLALNANPDGTLAALLEDCADAAADVLLQKAVWTRAEFAAVVGRAGKELGP
TMQAAVTRVEKVLTASHEVHVALPDKPSTAQADAVADIRSQLDRLLPSGFVTVTGIARLG
DLARYLTAIARRLERLPQGLAADRERMARVHAVEDAYDDLVVALSAARAEDPKVRDIAWQ
IEELRVSLWAQQLGTPRPVSEQRIFKAIDAVGR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaaccgtcagttgccgagctgcgctcccgcctcgacggtttgacgatccgcgac
gccgaccggctgcgccgtcggctccggaatctccggggtggtgacacggccaagattgcc
gaacagatcgcgaccgcggaaggcctcgtgctgacccgccaggccgccgtcccggccatc
acctaccccgacctgccggtcagtgaacaccgcgacgagctggccaaggccatcagcgag
aaccaggtggtggtggttgccggcgcgaccggctcgggcaagaccacgcagctgcccaag
atctgcctggacctgggccgtggcatccgcggcaccatcggccacacccagccccgccgg
ctggccgctcgcaccgtggcccagcgcatcgccgacgaactcggcaccccactgggcgag
gccgttggctacaccgtgcgcttcaccgatcaggccagcgactcgaccctgatcaagctg
atgaccgacggcattctgctcgccgagattcaaagagaccgccgcctgctgcgctacgac
acgctgatcctcgacgaggcgcacgagcgcagtctcaacatcgacttcctgctcggctat
ctgcgcgagctgttgccgcgccgtcccgatctcaaggtcatcgtcacgtcggccaccatc
gagccggagcggttcgcggcgcacttcaacgacgcgccgatcgtcgaagtctcggggcgg
acgtatccggtcgagattaggtaccggccgctggaagtccccgcgccgacgtcggatgac
gaggaccccgacgatcccgaccacgagatcgtccggaccgagctacgcgatccgaccgaa
gcgatcgtcgacgcggtccgcgaactggaagccgagccactgggcgacgtgctggtgttc
ctgtccggtgaacgcgaaattcgggacaccgcagaagctctcaaagaccttcgcaacacc
gaggtgctgccgctgtatgcccggctgccgaccgcggaacagcagaaggtgttccagccg
agtcgcagcggtcggcgaatcgtgttggccaccaacgtggccgagacctcgctgaccgtt
cccgggatccgctatgtcgtcgaccccggtaccgcgcggatctcccgctacagccgtcgg
accaaggtgcagcggctgcccatcgagccgatctcgcaggcctcggccgcccagcgggcc
ggtcgttcgggacgcaccgccccgggtgtgtgcatccggctgtactcggaggaagatttc
gaatcccggccccgctacaccgatccggagatcctgcgaactaacttggcggcggtcatc
ctgcagatggccgccctgcagctcggcgacatcgcagaattccccttcctggacccgccg
gacgcccgcagcatccgcgacggggtccagctgctgcaggagctcggcgccttcgatacc
gcgggtgccttgaccgacatcggacgacgcctggcccggctgccgctggacccgcgcgtc
gggcggatgatccttcaggccgacaccgagggctgtgtgcgcgaggtgctggtgctggcg
gccgcgctgtccatccccgatccccgggagcggccgacggacaaagaggaggcggccagg
cagaagcacgcccggttcgcagacgagcattccgatttcatctcctacctcaacttgtgg
aactatctgcgcgagcagcgaaaccagcgttccggcaatgctctccggcggatgtgccgc
gaggagttcctgcactacctgcggatccgcgaatggcaggacctgaccgggcagctgcgc
agcatcgcccgtgacatcgggatccgcgagagtgacgaggccgccgaaccggcgagcatc
cacgctgcgctgaccgcgggcctgctctcgcacgtcgggctgcgcgaaggcgagggccgc
gactaccaaggtgcccgcaactccaagttcgtgctggcccccggctcggtcctgaccaag
aagccgccgcgctggatcgtggtggccgacctggtcgagacgagtcggctgttcggtcgc
attgcggccaaggtcgagcccgaagccatcgagcgggtcgccggacatctggtgcaacgc
aactacagtgagccgcactgggaggccaggcgcggggcggtggtggcgttcgaacgggtc
acgctctacgggctgccgctcgtcccgcgtcgcaagatcgggtacacccagatcgatccg
gagctgtgccgtgagttgttcatccggcatgcgctggtcgagggagactggcagacccgg
caccacttcttccgcgacaacgcccggttgcgggccgaactcgaggagatcgaggagcgg
gcccgtcggcgtgacctactggtcggcgacgacgacatctacgccctctacgatgcccgc
atcccggccgacatcgtgtccgcgcgccatttcgacgcatggtggaagaagcagcggcac
aagacacctgacctgctcaccttcacccgtgacgacctgttgcgttccgaggacggcgcg
gacaatcccgacacctggcagaccggcgacctcgaactgccgctgacctaccggttcgag
ccgggtgccgccgacgacggcgtcacggtgcatgtgccggtcggcgtgctggcccggctc
ggcggcgacggcttcgcctggcaggtaccggctctgcgggaggaactggtcaccgcactg
atcaagtcgttgcccaaggacctgcgtcgcaacttcgtccccgctccggacaccgcgcgc
gccatcctgggggacatcgacccctccgccgggtccctgctggacgaggtccagcgcgaa
ctgcgcaggcgcagcggcattctggtgcccatcgacgcgttcgacctgagcaagatcccg
gaccacctacggatgaccttcgccgtggaagcggccgacggcaaagaggtggcccgcggc
aaggacatcgacgcactgcgagagcagctggcggttcccgtcgcgcaggccgtggccgac
gcgctgggcggggatctggaccgcaccggcctgaaggcctggcccgaggatctcgacgaa
ctcccacgcaccgtggagagcgtcagcggcgggcacaccgtgcgcgggtacccggccttc
gtggacaacggaaactcggtcggcatcaaggtgttcgccaaccccgccgaacaggccgcg
gccatgcggccgggcctccgccggctgctgcggctcaccgcaccgtcgccggtcaaggcg
atcgagcggggtttgagcacccggacccggctggcgctcaacgcgaacccggacggcacc
ctggccgccctgctcgaggactgcgccgacgcggccgccgatgtgttgctgcagaaagcg
gtgtggaccagggccgagttcgcggcggtcgtcggccgggccggcaaggaactcggtccc
acgatgcaagcggcggtgacccgggtcgagaaggtcttgaccgcgtcgcacgaggtacac
gtcgcgctgccggacaagccgtcgaccgcgcaggccgacgccgttgcggatatccggtct
cagctggatcgattgctgcccagtggatttgtcaccgtcaccggaattgcgcggctcggc
gacctggcccgatacctcaccgcaatcgcccgtcggctggagcggctaccgcaggggctt
gccgccgaccgggagcggatggcccgcgtgcacgccgtcgaggatgcctacgacgatctg
gtcgtggcgttgtcggcagcccgggccgaggacccgaaggtgcgcgatatcgcatggcag
atcgaggagttacgggtgagcctgtgggcccagcagctcggcaccccgcgaccggtcagc
gagcagcgcatcttcaaggcgatcgacgccgtcggacgttag
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