Mycolicibacterium boenickei: MBOE_25480
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Entry
MBOE_25480 CDS
T07414
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbok
Mycolicibacterium boenickei
Pathway
mbok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MBOE_25480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbok03400
]
MBOE_25480 (mfd)
Enzymes [BR:
mbok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MBOE_25480 (mfd)
DNA repair and recombination proteins [BR:
mbok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MBOE_25480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBX90899
LinkDB
All DBs
Position
2656770..2660402
Genome browser
AA seq
1210 aa
AA seq
DB search
MTAPGHNHVQTPIAGLVELALTDPSLQDVLRRAADRPADLALVGPASARVLVAAGLAQQG
PLLVVAATGREADDLTAELRGVVGDAVALFPSWETLPHERLSPGVETVAARLLLLRRLAH
PEDATLGSPLRVVVTTTRSLLQPMAPDVVDTEPVTLTVGAEAEFEAVIARLVDLAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSIADQRSIPEIPVQHVVAV
PCRELLMTADVRERAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLHPVQ
PTTLTHHLPEGAPVLVCDPEKVRTRAADLIKTGQEFLEASWSTAAVGGDAPIDIEALGAS
GFVPFEQAREDAVAGGHPWWTLSQLPDGKATELDLRPAPSARSQQSLEEIFAMLRAHVAT
GGYAAVVTPGTGTAHRVVEQLGDSDTPAGMLEPGEAPKAGVVGVLRGPLHDGLILPGANL
VIITETDLTGNRVTASEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWASTKTKARK
AVREIASELVALYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETMDQLTAITEVKSDMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVT
VKGLSRFTDPAESRATMEGMKDGSVDVVIGTHRLLQTGVMWKDLGLIIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVA
AALRRELLRDGQAFYIHNRVRTIDQAAARIRQLVPEARVVVAHGQMNEETLEKTVEGFWN
REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPN
SPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAADGKTVATPEEPKEVRVDLPVDAHLPPEYIGSDRLRLEGYRRLAAATDEE
AVRAVVDELVDRYGPLPEPAQRLVAVARLRLLCREYGITEIGAVSASTVKLSPMVLPDSA
QLRLKRMYPGGHYRATTSVVQVPLPRAGDGVGAPRIRDLELVQWVAGLVLVLNGQTQSTF
DVTAGLNSPD
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacaaccatgtccagaccccgattgcgggtctcgtcgagctggca
ttgaccgatccgtccctgcaggacgtccttcgccgtgccgccgaccggcccgccgatctc
gcgctcgtcgggccggccagtgcccgcgtgctggtggccgccgggctggcccagcagggt
ccgttgctggtggtcgccgccaccggccgggaggccgacgatctgaccgccgagctgcgc
ggggttgtcggcgacgccgtcgccctcttcccgtcctgggagacgctgccgcacgagcgg
ctgtccccgggtgtggagaccgtcgcggcccggttgttgctgttgcgcaggctggcccat
cccgaggacgcgacactgggttcgccgctacgcgtggtggtcaccaccacgcgctcgctg
ctgcagccgatggctcccgacgtcgtcgataccgaaccggtgaccctcaccgtcggtgcc
gaggccgagttcgaagcggtcatcgcccggctggtcgacctggcctacacccgcgtcgac
atggtcggcaaacgtggagagttcgccgtgcgcggcggcatcctcgacctgttcccgccg
accgccgagcatccggtgcgcgtcgagttctggggcgacgagatctccgagatgcggatg
ttctcgatcgccgaccagcgctcgattcccgagatcccggtgcagcacgtggtcgccgtg
ccgtgccgtgaactgctgatgaccgccgatgtgcgtgagcgcgcggcggtgctcgccgcc
gagcaccccacccatgagaacagcgtgcccggcagcgtgcccgacatgctggccaagctc
gccgagggcatcccggtcgacggcatggaggcgctgctgccgctgctgcaccccgtgcag
ccgacgacgctgacgcaccacctgcccgagggcgccccggtgctggtgtgcgacccggag
aaggtgcggacccgggccgccgacctgatcaagaccgggcaggagttcctcgaggcctcg
tggtcgacggccgcggtcggcggtgatgcgcccatcgacatcgaggcgctgggcgcgtcc
ggattcgtcccgttcgagcaggcgcgcgaagacgccgtggccggcgggcatccgtggtgg
acgttgagccagctgcccgacgggaaggccaccgaactcgatctgcggcccgcgccttcg
gcccgcagtcagcagagcctcgaagagatcttcgccatgctgcgggctcacgtggccacc
ggcggatacgccgcggtggtcaccccgggcaccggcacagcccaccgcgtggtggagcag
ctgggtgattccgatacgcccgcagggatgttggagcccggcgaggcgcccaaggccggt
gtggtcggggtgctcagggggccgttgcacgacggcctgatcctgcccggcgccaacctc
gtcatcatcaccgagaccgatctgaccggtaaccgggtgacggcctcagagggcaaaaag
cttgcggccaaacgccgtaacgtcgtcgatccgctggcactgaccgccggcgacctcgtc
gtgcacgatcagcacggcatcggcaagttcgtcgagatgaccgagcgcgtggtgggcgga
gcccggcgcgagtacctggtgctggagtacgcgtcgtccaaacgcggtggcggatcggac
cggctgtatgtgccgatggattcgctggatcagctgtcgcggtacgtcggcggcgaggcg
ccgtcgctgtccaagctcggcggaagcgactgggccagtacgaaaaccaaggcccgcaag
gctgttcgggagatcgccagtgaactggtggcgctgtacgccaaacggcaatcggcgccc
gggcatgcgttcggccctgacactccatggcagaacgagatggaggacgcgttcggcttc
accgagaccatggaccagctgaccgcgatcaccgaggtcaaatccgatatggagaagccg
gttccgatggaccgggtgatctgcggcgacgtgggttacggcaagaccgagatcgcggtg
cgcgcggcgttcaaggccgtgcaggacggcaaacaggtggcggtgctggtgccgacgacg
ctgctggccgatcagcatctgcagaccttcaccaaccggatggcggggttcccggtgacc
gtcaagggattgtcgcggttcaccgatccggccgagtcgcgcgccaccatggaaggaatg
aaggacgggtcggtcgacgtggtgatcggcacgcaccgcctgctgcagaccggggtgatg
tggaaagacctgggcctcatcatcgttgacgaggaacagcggttcggtgtcgagcacaaa
gagcacatcaagtcgatgcgcacccacgtcgacgtgctcaccatgagcgccaccccgatc
ccgcgcaccctggagatgagcctggcgggcatccgcgagatgtcgaccatcctcaccccg
cccgaggagcgctacccggtgctgacctacgtgggtccgcacgacgacaagcaggtggcc
gccgcgctgcgccgtgagctgctgcgcgacgggcaggcgttctacatccacaaccgggtg
cgcaccatcgatcaggccgcggcgcggatccgtcagctggtgcccgaggcgcgggtcgtc
gtcgcgcacgggcagatgaacgaggagacgctggagaagaccgtcgagggcttctggaac
cgtgagtacgacatcctcgtgtgcaccaccatcgtcgagaccgggctggacatctcgaac
gccaacacgctgatcgtcgagcgggccgacaccttcgggttgtcccagctccaccagttg
cgtggccgcgtgggccgcagccgcgagcgtggctacgcctacttcctgtacccgcccaat
tcgccgctgaccgagaccgcatacgaccggctggccaccatcgcgcagaacaacgagctg
ggtgccggtatggccgtggcgatgaaggacctggagatccgcggcgcgggcaacgtgttg
ggtgtcgagcagtccggtcacgtggcaggagttggcttcgacctctacgtgcggctggtc
ggcgaggccgtcgaggcctaccgggccgcggctgacgggaaaaccgttgccacaccggag
gagccgaaggaggtgcgggtcgatctgccggtcgacgcacacctgccgccggagtacatc
ggcagtgaccggctgcggctggagggctaccggcggctcgcggcggccacggacgaggag
gccgtgcgggcggtcgtggatgagctcgtcgaccgttacggcccgttgcccgagcctgct
caacgtctggttgcggtggcccggttgaggctgctgtgccgcgagtacgggatcaccgag
atcggtgcggtgtcggcctccacggtgaagctgtctccgatggtgctgccggactccgcc
cagttgcggctcaagcggatgtacccgggcgggcactatcgggccaccacctcggtggtc
caggtcccgttgccgcgtgccggtgacggtgtcggtgcgccgcgtattcgtgatcttgaa
ttggtgcagtgggtggccggattggtgctggtgctcaacggacaaacacagagcaccttc
gacgtcaccgccggactgaattccccagattaa
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