KEGG   Mycolicibacterium boenickei: MBOE_25480
Entry
MBOE_25480        CDS       T07414                                 
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
mbok  Mycolicibacterium boenickei
Pathway
mbok03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mbok00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MBOE_25480 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mbok03400]
    MBOE_25480 (mfd)
Enzymes [BR:mbok01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MBOE_25480 (mfd)
DNA repair and recombination proteins [BR:mbok03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      MBOE_25480 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII Cas3-like_C_2 LSDAT_prok MFD_D3 DUF3638 RecG_dom3_C
Other DBs
NCBI-ProteinID: BBX90899
LinkDB
Position
2656770..2660402
AA seq 1210 aa
MTAPGHNHVQTPIAGLVELALTDPSLQDVLRRAADRPADLALVGPASARVLVAAGLAQQG
PLLVVAATGREADDLTAELRGVVGDAVALFPSWETLPHERLSPGVETVAARLLLLRRLAH
PEDATLGSPLRVVVTTTRSLLQPMAPDVVDTEPVTLTVGAEAEFEAVIARLVDLAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSIADQRSIPEIPVQHVVAV
PCRELLMTADVRERAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLHPVQ
PTTLTHHLPEGAPVLVCDPEKVRTRAADLIKTGQEFLEASWSTAAVGGDAPIDIEALGAS
GFVPFEQAREDAVAGGHPWWTLSQLPDGKATELDLRPAPSARSQQSLEEIFAMLRAHVAT
GGYAAVVTPGTGTAHRVVEQLGDSDTPAGMLEPGEAPKAGVVGVLRGPLHDGLILPGANL
VIITETDLTGNRVTASEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWASTKTKARK
AVREIASELVALYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETMDQLTAITEVKSDMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVT
VKGLSRFTDPAESRATMEGMKDGSVDVVIGTHRLLQTGVMWKDLGLIIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVA
AALRRELLRDGQAFYIHNRVRTIDQAAARIRQLVPEARVVVAHGQMNEETLEKTVEGFWN
REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPN
SPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAADGKTVATPEEPKEVRVDLPVDAHLPPEYIGSDRLRLEGYRRLAAATDEE
AVRAVVDELVDRYGPLPEPAQRLVAVARLRLLCREYGITEIGAVSASTVKLSPMVLPDSA
QLRLKRMYPGGHYRATTSVVQVPLPRAGDGVGAPRIRDLELVQWVAGLVLVLNGQTQSTF
DVTAGLNSPD
NT seq 3633 nt   +upstreamnt  +downstreamnt
atgaccgcaccggggcacaaccatgtccagaccccgattgcgggtctcgtcgagctggca
ttgaccgatccgtccctgcaggacgtccttcgccgtgccgccgaccggcccgccgatctc
gcgctcgtcgggccggccagtgcccgcgtgctggtggccgccgggctggcccagcagggt
ccgttgctggtggtcgccgccaccggccgggaggccgacgatctgaccgccgagctgcgc
ggggttgtcggcgacgccgtcgccctcttcccgtcctgggagacgctgccgcacgagcgg
ctgtccccgggtgtggagaccgtcgcggcccggttgttgctgttgcgcaggctggcccat
cccgaggacgcgacactgggttcgccgctacgcgtggtggtcaccaccacgcgctcgctg
ctgcagccgatggctcccgacgtcgtcgataccgaaccggtgaccctcaccgtcggtgcc
gaggccgagttcgaagcggtcatcgcccggctggtcgacctggcctacacccgcgtcgac
atggtcggcaaacgtggagagttcgccgtgcgcggcggcatcctcgacctgttcccgccg
accgccgagcatccggtgcgcgtcgagttctggggcgacgagatctccgagatgcggatg
ttctcgatcgccgaccagcgctcgattcccgagatcccggtgcagcacgtggtcgccgtg
ccgtgccgtgaactgctgatgaccgccgatgtgcgtgagcgcgcggcggtgctcgccgcc
gagcaccccacccatgagaacagcgtgcccggcagcgtgcccgacatgctggccaagctc
gccgagggcatcccggtcgacggcatggaggcgctgctgccgctgctgcaccccgtgcag
ccgacgacgctgacgcaccacctgcccgagggcgccccggtgctggtgtgcgacccggag
aaggtgcggacccgggccgccgacctgatcaagaccgggcaggagttcctcgaggcctcg
tggtcgacggccgcggtcggcggtgatgcgcccatcgacatcgaggcgctgggcgcgtcc
ggattcgtcccgttcgagcaggcgcgcgaagacgccgtggccggcgggcatccgtggtgg
acgttgagccagctgcccgacgggaaggccaccgaactcgatctgcggcccgcgccttcg
gcccgcagtcagcagagcctcgaagagatcttcgccatgctgcgggctcacgtggccacc
ggcggatacgccgcggtggtcaccccgggcaccggcacagcccaccgcgtggtggagcag
ctgggtgattccgatacgcccgcagggatgttggagcccggcgaggcgcccaaggccggt
gtggtcggggtgctcagggggccgttgcacgacggcctgatcctgcccggcgccaacctc
gtcatcatcaccgagaccgatctgaccggtaaccgggtgacggcctcagagggcaaaaag
cttgcggccaaacgccgtaacgtcgtcgatccgctggcactgaccgccggcgacctcgtc
gtgcacgatcagcacggcatcggcaagttcgtcgagatgaccgagcgcgtggtgggcgga
gcccggcgcgagtacctggtgctggagtacgcgtcgtccaaacgcggtggcggatcggac
cggctgtatgtgccgatggattcgctggatcagctgtcgcggtacgtcggcggcgaggcg
ccgtcgctgtccaagctcggcggaagcgactgggccagtacgaaaaccaaggcccgcaag
gctgttcgggagatcgccagtgaactggtggcgctgtacgccaaacggcaatcggcgccc
gggcatgcgttcggccctgacactccatggcagaacgagatggaggacgcgttcggcttc
accgagaccatggaccagctgaccgcgatcaccgaggtcaaatccgatatggagaagccg
gttccgatggaccgggtgatctgcggcgacgtgggttacggcaagaccgagatcgcggtg
cgcgcggcgttcaaggccgtgcaggacggcaaacaggtggcggtgctggtgccgacgacg
ctgctggccgatcagcatctgcagaccttcaccaaccggatggcggggttcccggtgacc
gtcaagggattgtcgcggttcaccgatccggccgagtcgcgcgccaccatggaaggaatg
aaggacgggtcggtcgacgtggtgatcggcacgcaccgcctgctgcagaccggggtgatg
tggaaagacctgggcctcatcatcgttgacgaggaacagcggttcggtgtcgagcacaaa
gagcacatcaagtcgatgcgcacccacgtcgacgtgctcaccatgagcgccaccccgatc
ccgcgcaccctggagatgagcctggcgggcatccgcgagatgtcgaccatcctcaccccg
cccgaggagcgctacccggtgctgacctacgtgggtccgcacgacgacaagcaggtggcc
gccgcgctgcgccgtgagctgctgcgcgacgggcaggcgttctacatccacaaccgggtg
cgcaccatcgatcaggccgcggcgcggatccgtcagctggtgcccgaggcgcgggtcgtc
gtcgcgcacgggcagatgaacgaggagacgctggagaagaccgtcgagggcttctggaac
cgtgagtacgacatcctcgtgtgcaccaccatcgtcgagaccgggctggacatctcgaac
gccaacacgctgatcgtcgagcgggccgacaccttcgggttgtcccagctccaccagttg
cgtggccgcgtgggccgcagccgcgagcgtggctacgcctacttcctgtacccgcccaat
tcgccgctgaccgagaccgcatacgaccggctggccaccatcgcgcagaacaacgagctg
ggtgccggtatggccgtggcgatgaaggacctggagatccgcggcgcgggcaacgtgttg
ggtgtcgagcagtccggtcacgtggcaggagttggcttcgacctctacgtgcggctggtc
ggcgaggccgtcgaggcctaccgggccgcggctgacgggaaaaccgttgccacaccggag
gagccgaaggaggtgcgggtcgatctgccggtcgacgcacacctgccgccggagtacatc
ggcagtgaccggctgcggctggagggctaccggcggctcgcggcggccacggacgaggag
gccgtgcgggcggtcgtggatgagctcgtcgaccgttacggcccgttgcccgagcctgct
caacgtctggttgcggtggcccggttgaggctgctgtgccgcgagtacgggatcaccgag
atcggtgcggtgtcggcctccacggtgaagctgtctccgatggtgctgccggactccgcc
cagttgcggctcaagcggatgtacccgggcgggcactatcgggccaccacctcggtggtc
caggtcccgttgccgcgtgccggtgacggtgtcggtgcgccgcgtattcgtgatcttgaa
ttggtgcagtgggtggccggattggtgctggtgctcaacggacaaacacagagcaccttc
gacgtcaccgccggactgaattccccagattaa

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