Mycolicibacterium boenickei: MBOE_62680
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Entry
MBOE_62680 CDS
T07414
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mbok
Mycolicibacterium boenickei
Pathway
mbok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MBOE_62680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbok03021
]
MBOE_62680 (rpoC)
03400 DNA repair and recombination proteins [BR:
mbok03400
]
MBOE_62680 (rpoC)
Enzymes [BR:
mbok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MBOE_62680 (rpoC)
Transcription machinery [BR:
mbok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MBOE_62680 (rpoC)
DNA repair and recombination proteins [BR:
mbok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MBOE_62680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBX94619
LinkDB
All DBs
Position
complement(6495749..6499702)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVERKAVEDQRDSDLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELQDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTEVAGDVGEYV
PAGKDSPEQGVYSSPAEAIMALDRGALSVRAKIKVRLTDARPPANVEAELFENGWKPGDA
WTADTTLGRVLFNELLPKGYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKQEILERHEAEAEAIERKYQRGALNHNERNESLVKIWQDA
TEEVGKALEEYYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRENDCETERGIIVTL
AERAADGSLIRDAHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDALLAAGISQVK
VRSVLTCASAAGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARIPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK
LSKRQRLRVITHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFETENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGIARYRDIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggcctggccactgcggacgacatc
cgcaactggtcgttcggcgaggtcaagaagccggagaccatcaactaccgcaccttgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcaccc
gtcacgcacatctggtacttcaagggtgttccgtcccggttgggctacctgctcgacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtgatcacctctgtcgac
gacgagatgcgccacaacgagctgtcgacgctcgaggccgagatggccgtcgagcgcaag
gccgtcgaggatcagcgcgactccgacctggaggcccgggcccagaagctcgaggccgac
ctggccgagctcgaagccgagggcgccaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgtgagatgcgtcagctccgtgaccgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggctcccaagcagctcatcgtcgatgaggtgctg
taccgcgagctgcaggaccgctacggcgagtacttcaccggtgccatgggcgcggagtcg
atcaagaagctcatcgagaacttcgacatcgaggccgaggccgagaacctgcgcgagacc
atccgcagcggcaagggtcagaagaagctgcgcgcgctcaagcgtctgaaggtcgtcgcg
gccttccagcagtcgggtaactccccgctgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgtccgatggttcagctcgacggtggccgtttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccgtccggtcaccgggccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggctcttgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacctacgctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcagaggcccaggccgaggctcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggtaagccgctggccatgccgcgtctggac
atggtgaccggtctgtacttcctgaccaccgaggtggccggcgatgtcggcgagtatgtg
cccgccggcaaggattcgccggagcagggtgtgtacagctcgccggccgaggccatcatg
gcgctggaccgcggtgccctgtcggtgcgcgccaagatcaaggtgcggctgaccgatgcg
cgtccgccggccaacgtcgaggccgagctgttcgagaacggctggaagccgggcgatgcc
tggaccgcggacaccacgctgggccgggtgctcttcaacgagctgctgcccaagggctac
ccgttcgtcaacgagcagatgcacaagaaggtccaggcccggatcatcaacgatctggcc
gagcgcttcccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgccggcttc
cactgggccacccgttcgggtgtcacggtctcgatggccgacgtgctggtgccgccgcag
aagcaggagatcctggagcggcacgaggccgaggccgaggcgatcgagcgcaagtaccag
cgcggcgcgctgaaccacaacgagcgcaacgagtccctggtcaagatctggcaggacgcc
accgaagaggtgggtaaggcgctggaggagtactacccggccgacaacccgatcatcacg
atcgtgaagtccggcgccacgggtaacctcacccagacccgcaccctggcaggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgcccgatcaagtcctcgttccgt
gagggcctgacggtgctggagtacttcatcaacacccacggtgctcgtaagggtctggcc
gacaccgcgcttcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgttcgcgagaacgactgtgagaccgagcgcggcatcatcgtcacgctg
gccgagcgcgctgcggacggttcgctgatccgcgatgcgcacgtcgagacctcggcgttc
gcccggaccctggccaccgatgcggtcgacgccgacggcaacgtcgtcatcgagcgcggc
catgacctgggtgacccggccatcgacgcgctgctggctgccggcatctcgcaggtgaag
gtccgctccgtgctgacctgcgcctcggccgccggtgtgtgtgccaagtgctacggccgt
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggtatcgtcgccgcgcag
tccatcggtgagcccggtacccagctgacgatgcgtaccttccaccagggtggtgttacc
ggtggcgccgacatcgtcggtggtctgccccgtgtgcaggagctgttcgaggctcgtatc
ccgcggaacaaggcgcccatcgccgacgtcgcgggccgggtccggctggaggagagcgac
aagttcttcaagatcaccatcgttcccgacgacggtggcgaggaagttgtctacgacaag
ctctccaagcgtcagcgcctgcgcgtgatcacccacgaggacggctccgaaggcgtgctg
tccgacggtgaccacgtcgaggtcggcgaccagctgatggaaggctccgcggatccgcac
gaggtgctgcgtgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgggcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgtcgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcg
ctgaccgagcgtgccgagttcgagaccgagaaccgtcgcgtcgtggccgagggtggcgag
cccgcggccggacgtccggtgctgatgggtatcaccaaggcatcgctggccacggattcg
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctcaccgatgcggcgatcaac
tgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggtaccggcatcgcccgttaccgcgacatccaggtgcagccgaccgaagaggcccgc
gctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gccaccggtgctgcggtgccgctggacgattacggatactcggactaccggtaa
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