Mannheimia bovis: ICJ55_01395
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Entry
ICJ55_01395 CDS
T07212
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mbos
Mannheimia bovis
Pathway
mbos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ICJ55_01395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbos03021
]
ICJ55_01395 (rpoC)
03400 DNA repair and recombination proteins [BR:
mbos03400
]
ICJ55_01395 (rpoC)
Enzymes [BR:
mbos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ICJ55_01395 (rpoC)
Transcription machinery [BR:
mbos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ICJ55_01395 (rpoC)
DNA repair and recombination proteins [BR:
mbos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ICJ55_01395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QNS15443
UniProt:
A0A7H1C388
LinkDB
All DBs
Position
complement(261356..265639)
Genome browser
AA seq
1427 aa
AA seq
DB search
MKDLVKFLKAQTKSSDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFMDAEERWGDEFEAK
MGAEGIQALLRDLDLEHQCEVLREELQETNSETKRKKITKRLKTLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRVTEYEKNEAGEFVAKTELVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEA
EVAEIQEQFNGGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTDEVLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKDGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKNDGAEVNAGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDSNGNDILIPGTDVPAQYFLPGKAIVTLDDGAEIAVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKDPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATITNAYDSEFLDGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEAGI
AVAPEFEAPAAKENSFVTDADIEAEFEFVADDATQSLAALLNAGDEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtgaagtttttaaaagcacaaacaaaatcaagcgatgattttgatgtg
attaaaattggtttagcatcaccggacaagatccgttcttggtcgttcggtgaagtaaaa
aaaccggaaacgattaactaccgtaccttcaaaccagagcgtgatggtttattctgtgca
cgtattttcggaccggtaaaagattacgagtgtttatgtggtaaatataaacgtttaaaa
catcgtggtgtaatttgtgaaaaatgcggtgttgaagtaacccaaactaaagtacgccgt
gagcgtatgggtcatatcgaattagcgtgtccggttgcccacatttggttcttaaaatca
cttccgtcccgtatcggattaattttagatatgccgttacgtgatattgaacgtgtactt
tatttcgaaagctatgttgtaactgagccgggtatgactgatttagagaaaaatcagcta
ttaaccgaagaacagtttatggatgctgaagagcgttggggcgatgagtttgaagcgaaa
atgggtgccgaaggtatccaagcattacttcgtgatttagatttagaacaccaatgcgaa
gtattgcgtgaagagttacaagaaaccaactctgaaaccaaacgtaaaaaaatcactaaa
cgtttaaaaaccttagaagcattcttgcaatcaggcaacaaacctgagtggatggtaatg
actgtattaccggtattgccaccggatttacgtccgttagttccgcttgatggtggtcgt
tttgcaacgtctgacttaaatgatttataccgccgtgtaatcaaccgtaataaccgttta
aaacgcttactagacttagttgcaccggatattatcgtgcgtaacgaaaaacgtatgtta
caagagtctgtagatgcgttattagacaacggtcgtcgtggtcgtgcgattaccggttct
aacaaacgtccgttaaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgtagactactcaggtcgttcggtaattaccgtaggtcca
tacttacgcttacaccaatgtggtttaccgaagaaaatggcattggaattattccgtccg
tttatctattctaaattagaatctcgtggcattgcatcaactatcaaagctgcgaagaaa
atggtagaacgtgaagatccgatcgtatgggatattcttgcagaagttattcgcgagcac
ccgattcttcttaaccgtgcaccaacgcttcaccgtttaggtattcaagcgtttgaaccg
ttattgattgaaggtaaagcaatccagttacaccctcttgtgtgtgcggcgttcaacgcg
gacttcgacggtgaccaaatggcggtacacgttccattaacactcgaagcacaattagaa
gcacgtgcgttaatgatgtctaccaacaacgtactttcaccggcaagtggtgatccgatt
atcgttccatctcaagacgttgtattaggcttgtactatatgacccgcgagaaagtaaac
ggtaaaggcgaaggaatgtacttcttagaccctcgtgaagcggagaaggcttaccgtaca
ggtcaggcagaattacactctcgtgtaaaagtgcgtgtaacagaatatgagaaaaatgaa
gcaggcgaatttgttgctaaaacagaattagtggataccacaatcggtcgtgcaatctta
tggatgatcgcaccaaaaggtatgccatttagcttattcaaccaaacattaggtaaaaaa
gcgatctcaaaattaattaacgaaagctaccgccgtttaggtttgaaagaatccgttgtt
ttagctgaccaaattatgtacacaggtttcgcttacgctgcacgttcaggtgcttctgtt
ggtattgatgatatggtgatcccagagcaaaaatacgccatcattgaagcagctgaagca
gaggttgctgaaattcaagaacagttcaatggcggtttagtgactgcgggtgagcgttat
aacaaagtaatcgatatttgggcggcagcaaacgaacgtgtggcgaaagcgatgatggaa
aacctttcaacggaggaagttattaaccgtgaaggtaaccctgaaaagcaagcctcattt
aacagcatctttatgatggcggactcaggtgcacgtggttctgcggcacagattcgtcag
ttagccggtatgcgtggtttgatggcacgtccggacggctcgattatagaaactccaatc
acggcaaacttccgtgaaggcttgaacgttcttcagtactttatttctacccacggtgca
cgtaaaggtcttgccgataccgcattaaaaacagcgaactcaggttacttaacccgtcgt
ttagtggatgtagcacaagatttagtgattatcgaagatgactgcggtactcacgaaggt
attgtgatgaccccgttaatcgaaggtggtgatgtgaaagaagctctgcgtgatcgagta
ttaggtcgtgtagtagctgaagatgtattaaaaccgggtacagatgaagttttaattcca
cgtaacaccttattagatgaaaaatggtgtgatgtggtagatcgtgaatctgttgatgtg
atcaaagtacgctcggtagtaacttgtgatacagactttggtgtgtgtgcgaaatgttac
ggtcgtgatttagcacgtggacacttaattaaccaaggtgaagcggttggcgttattgca
gcacaatctatcggtgagccgggtacacagttaacgatgcgtacgttccacattggtggt
gcggcatctgcggcagcgaaagaatctagcattcaagtgaaaaatgcaggtacgattaaa
ctcactaacgcgaaattcgttactaacaaagacggcaaaatcgtattaacttcacgtaac
actgaattgacggttatcgacactttcggtcgtaccaaagagaactataaagtgccttac
ggtgcagtgttatcgaaaaatgacggtgcagaagtgaatgcaggtgaagtagttgcgaat
tgggatccgcacacaatgccggttatctcagaggtttcaggtcgtatccaatttagcgat
atcgttgatggcttaaccgtaacgcgtcaaactgacgaattaacaggtttatcatcaatc
gtggttcaagatgtgggtgaacgtgcaacagcaggtaaagacttacgtccggcattacgt
ttagtagatagcaacggtaacgacatcttaattccgggtacagacgttccggcacaatac
ttcttaccgggtaaagcaatcgtaaccttagatgatggtgcagaaattgcagtgggtgaa
gcattagctcgtattccacaagaatctgtaggtacaaaagatattactggtggtcttcca
cgcgttgcggacttatttgaagctcgtaaaccgaaagatccggcaatcttggcagaaatt
tcaggtattgtatcattcggtaaagaaaccaaaggcaaacgtcgcttggtaattacaccg
gctgaaggtgaagcgtttgaagaaatgattccaaaatggcgtcagctcaacgtattcgaa
ggcgaaatggtacaacgtggtgatgtcatttccgatggtgcagaaacgccacacgatatc
ttgcgtttacgtggtgttcacgcagtaaccgactatatcgttaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgacaagcacattgaagttatcgttcgccaaatg
ttacgtaaagcaaccatcaccaacgcttacgactctgaattcctagacggagaacaggtt
gaagtagctcgagtgaaaatcgctaaccgtaaacgtgcggaagaaggcaagccacttgtt
gagttcgagcgtgaattgcttggtattactaaagcatcacttgcaacagaaagcttcatt
tctgcggcatcgttccaagaaacgactcgagtgcttaccgaagccgctgttgcaggtaaa
caagatgagttgcgtggtttgaaagagaacgtgatcgtaggtcgcttaattcctgcgggt
acaggttttgcttaccaccaagctcgtgcgaaaaaacgtgcacaacttgaagcaggcatt
gcagtagcacctgagtttgaagcaccggctgcaaaagaaaattcatttgtaaccgatgca
gacattgaagctgaatttgaatttgttgcagatgacgcaactcaaagtttagcagcattg
ttaaatgcgggtgatgaagagtaa
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integrated database retrieval system
