Mannheimia bovis: ICJ55_04430
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Entry
ICJ55_04430 CDS
T07212
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbos
Mannheimia bovis
Pathway
mbos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ICJ55_04430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbos03400
]
ICJ55_04430 (mfd)
Enzymes [BR:
mbos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ICJ55_04430 (mfd)
DNA repair and recombination proteins [BR:
mbos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ICJ55_04430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNS15983
UniProt:
A0A7H1C4S8
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All DBs
Position
867988..871437
Genome browser
AA seq
1149 aa
AA seq
DB search
MSLISFNLPQIGGNFQDHQTLGNLVGHSDTLAISQAAQQFNGLTVVVTPDTRTALRLEKS
LPQFANLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQGRKQIFLLPINTLMQKVC
PPSYLANNVLLIKKGDRFSIQNLRLQLENAGYRAVDQVLEYGEYAVRGAILDLYPMGADE
PFRLDFFDDEIDTIRTFDVDSQRTKAEIAEINLLPAHEFPTDSNGIEHFRTKFRETFGEI
RREPEHIYQQVSKGILNAGIEYWQPLFFAEMASLFDYLNPNTLFITYADIQQKAEQFQQD
TQNRYESRRVDPMRPLLPPSDLWFAIDEVNSWLKGYPRLSITAEKIRKSAAKMNANVANL
PDLAIQSGAKEPFTVFQQFRQTFKGDILFSVESEGRRETLLDLLAPLGVKPKQILQISDE
IEPLALMISNLDQGFVIEKSGRNLAIICETDLLGEKVQQKRSEKNRKTVNPDTLIRNLAE
LKIGQAVVHLENGVGRYGGLTVLDAGGMKAEYLVLHYANDAKLYVPVASLHLISRYIGGA
DETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDRFSAT
FPYEETDDQKMAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHKQVAILA
PTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKAILEKVAEGKVDILVGTHKLLQD
DVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMALNGMRDLSII
ASPPARRLSIKTFVRQSDEAVIREAILREILRGGQVYYLHNDVATIENCAEKLSQLVPEA
RVVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLAQL
HQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLGAGFVLATHDLEIRGAG
ELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPTLDEITQNQVEIELRVPALIPDDY
LPDVNMRLSFYKRIASSESDEQLKDLKIELIDRFGLLPEATKNLFAITQLRLTAQPLGLK
KIDAGIHGGYLEFKPTAQPDPMKFIQLIQKQPAVYSFEGAVKFKFRLPLEENNKRLEFVE
SLLKQILGE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaatttcatttaatctgccgcaaattggcggcaattttcaagatcaccaaacg
ctcggtaatttagtcgggcattctgacacgcttgccattagccaagctgctcaacagttt
aacggtttgacggtagtcgttacccctgatacccgcacggcgttacggctggaaaaatcg
ttgccgcaatttgccaatctgccggtgcaacttttccctgattgggagacattgccgtat
gataatttttcgccacatcaagatattatttccgcccgactttccgccctgttcgagcta
caacaagggcgtaagcagattttcttgttaccaatcaacaccttaatgcagaaggtctgt
ccgccgagttatcttgccaacaatgtgttgctgattaaaaaaggcgaccgtttttcgatt
caaaacctgcgtttgcagttggaaaatgccggctatcgggcggtggatcaggtgctggaa
tatggcgaatatgcggtgcgtggggcaattctcgacttgtacccaatgggggcggacgag
ccgttccgcttggatttttttgacgatgaaatcgacactatccgcacctttgatgtcgat
agccaacgtacgaaggcagaaattgccgaaatcaatctactaccggctcacgagttcccg
acagatagcaacggtattgagcattttcgcaccaaattccgtgaaactttcggcgaaatc
cgccgtgagcctgagcatatttaccagcaggtcagcaaaggcattttgaacgctgggatt
gagtattggcaaccgctgttttttgcggaaatggcaagcctgtttgactacctcaaccca
aatacgctgtttatcacttacgccgacattcagcagaaagctgaacaatttcaacaagat
acgcaaaatcgctatgaaagtcgccgagtcgatccgatgcgtccgttattaccaccgagc
gatctctggtttgcgattgatgaagtgaacagttggctcaaaggttacccacgtttaagc
ataaccgccgagaaaatccgtaaatctgcggcgaaaatgaatgcaaatgtagcgaattta
cctgatttagcaattcaatcaggggcaaaagagccgtttaccgttttccaacagttccgc
caaacattcaagggcgatattctgttttcggtggagagtgaaggacggcgtgaaaccttg
ttggatctgcttgctccgttgggggtgaagccgaagcagattttgcaaatttccgatgaa
attgaaccgcttgcgttgatgatttccaatttggatcaagggtttgtgattgaaaaaagc
ggtcgaaatttggcaattatttgcgaaaccgatctgcttggcgaaaaagtccaacaaaaa
cgcagcgaaaaaaaccgtaaaaccgtcaatcctgacaccctaatccgcaacttagcggaa
ctcaaaatcggacaagcggtagtgcatttggaaaacggcgtgggtcgctacggcggtttg
accgtgctggacgcaggtggaatgaaagcggaatatctcgtgctacattacgccaacgat
gccaaactctatgtgccggtggcgtcattacatttaatcagccgttatatcggcggtgcg
gacgaaaccgctccattacacaaactcggctcggaagcgtgggcgaaaacccgtcaaaaa
gcggcggagaaaatccgtgatgtagcggcggagttgctcgatgtttatgccaaacgagag
agccagactggcttcgcttttgcttacgacaaagcggaattcgaccgtttcagtgcgact
ttcccctacgaggaaacggacgatcagaaaatggcgatcaatgcggtgatcagcgatatg
tgccaagcgaaggcgatggatcggctcgtgtgtggcgatgtcggcttcggtaaaaccgaa
gtggccattcgggcaacgttcttggcggtgatgaaccataagcaggttgctattctcgcc
ccgaccactttgcttgcccagcaacattacgagaattttaaagaccgttttgcgaactat
cctgtgaacgtggaagtgctttcccgttttaaaaccgccaaagagcagaaagcgattttg
gaaaaagtggcggaaggcaaggtggatattttagtcggcacgcacaaactgttgcaggac
gatgtcgctttccgtgatctcggcttgctggtgattgacgaagaacaccgtttcggcgtg
cgtcaaaaagagaaaatcaaacagctgcgagcgaatgtcgatattctcacgctcaccgcc
acgccaattccaagaacgctgaatatggcgttgaacggtatgcgtgatctctcgattatc
gccagcccaccggctcgtcgtctgagcattaaaacctttgtgcgacaaagcgatgaagcg
gtgattcgagaagcgattttgcgtgaaattctgcgtggcggacaggtttactacctgcat
aacgatgttgctacgattgaaaattgtgccgaaaaattgagccaactggtgccggaagcc
cgtgtggtgattggtcacgggcagatgcgtgagcgagaattagagcgagtgatgagcgat
ttttatcatcaacgctttaatctgctggtctgctcgaccattatcgaaaccgggattgac
gtgccaactgctaacacaattattatcgaacgggcggataaattcggcttggcacagctc
caccaactgcgtgggcgtgtggggcgttcccaccaccaagcctacgcctatatgctcact
ccacacccgaaaacactgaccaaagacgctgagcaacgcttggaggcgatgagtactatc
gacaatctcggtgcaggttttgtccttgcgacccacgatttagaaatccgcggggcgggc
gaattactcggttcggaacagagcggacagattgagagcattggcttctcgctctatatg
gatttgctcgaaaatgcagtgaaagccttacaggaagggcgtgaaccgaccttggacgaa
atcacccaaaaccaagttgagattgagttgcgagtgccggcattaattccggacgactac
ctgccggatgtgaatatgcgactgtcgttctacaaacgtattgccagttccgagagtgat
gaacagctcaaagatctcaaaatcgagctgatcgaccgcttcggattactgcccgaggcg
actaaaaacctgtttgcgattacccaactccgccttaccgcccaaccgctcggcttgaag
aaaatcgatgccggcatccacggcggttatttggaatttaaaccaaccgcccagccggat
ccgatgaagtttattcagcttattcaaaaacaaccagcggtttacagctttgaaggggca
gtgaagtttaagtttagattaccgcttgaagaaaacaacaagcggttggaatttgtggaa
agtttgctaaaacagattctaggcgaataa
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