Mannheimia bovis: ICJ55_09210
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Entry
ICJ55_09210 CDS
T07212
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mbos
Mannheimia bovis
Brite
KEGG Orthology (KO) [BR:
mbos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbos03019
]
ICJ55_09210 (hrpA)
Enzymes [BR:
mbos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ICJ55_09210 (hrpA)
Messenger RNA biogenesis [BR:
mbos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ICJ55_09210 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
SLFN-g3_helicase
ResIII
AAA_23
NACHT
nSTAND_NTPase5
SRP54
T2SSE
ABC_tran
DNA_ligase_A_N
AAA_30
RsgA_GTPase
CTD5
WHD_HA2
DUF6145
PhoH
AAA_24
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QNS14910
UniProt:
A0A7H1C1Q5
LinkDB
All DBs
Position
1867540..1871445
Genome browser
AA seq
1301 aa
AA seq
DB search
MKKNLRKNEENQPLVKLENITTSDFRRLLGRLKGAENIKNEANKRSVLDEILQDLTACQA
RFFIRQAHAQNLKIGYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLPKMCLELG
RGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKVRFNDQVSENSLVKLMTDGIL
LAEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSATIDVERFS
KHFNNAPIIEVSGRTFPVEVRYRPIVEEEEQDQLQGILNAVDELQSEGRGDILIFMNGER
EIRDTAEALQKQELRHTEILPLYARLSATEQQRIFQPSGGLNRIILATNVAETSLTIPNI
KYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGICIRLYSEEDFNGR
PQFTDPEILRTNLASVILQMTSLGLSDIASFPFVDAPDSRQIQDGIRLLEELQAIIPNRN
GARLSTHKLTLIGKQLAQLPVDPRLGRMIIEASKNGSLHEVMMIVSALSIQDPRERPQEK
QQSADDKHRRFADKESDFLAFVNLWHFIQTQQKELSKNQFRNLCRKDYLNYNRVREWQDI
YHQLRLAVREMGLKINSEAATYQPIHTALLTGLLSHIGLKDNEKMHYLGARNAHFFIFPN
SVLFKKQPKWVMAAELVETTKLWGRMVARIEPEWIEPLAVHLTKSSYSEPHWAKSKGAVM
ASEKVSLFGIPIVTNRPVNYGSIDPSISREIFIRSALVEGEWHNNYKFFKENNRLIREVE
AMEHKSRRRDILVNEQVLFEFYDQRIGIEVVSAKHFDTWWKKASKSDPELLNFEKSFLIN
DNANLASELDFPNFWYQDNLKLKLSYQFEVGKDHDGVTVHIPLPLLNQVEPDGFDWQIPG
LRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRVEPFKKPLLESLSYELRRMTGVLVEA
EQWDISQLPPHLRMTFRVVDDKGKKLQESENLDELKFALKDEVQNTLSNIADDGIEQSGV
HIWNFAELPQFYEQKKAHFSVKAYPAIVDEQSAVGVKLFETEFEQARAMQAGLRRLLLLN
VPSPIKYLHEKLPNKAKLGLYFAPFGKVIELIDDCIACAVDKLIGEFGGFVWNEEKFNEL
HEYIRANLNDTTVEIAKQVEKCLTLAYELNKRLKGKLDFTMAFALSDIKTQIDGLIYPEF
VTKTGYQRLSDLHRYLTAIERRLDKLVIDSNTDRAKMLRVEQVQETYKQLLNKLPKSKPM
PDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRILNLIKEL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaatttgcgaaaaaatgaagaaaatcaaccgcttgtaaaactggaaaatatc
acaacgagcgattttcgtcgcctactcggtagattaaaaggggcagaaaatattaaaaat
gaagctaacaagcggtcagttttagacgaaattttgcaagatctaactgcttgtcaagct
cgcttttttatccgccaagctcacgctcaaaatctaaaaattggctatccggatctgcct
gtttcagctcgccgtgaggaaattttaaagctgattgccgaaaatcaagtagtcgtaatt
gctggtgaaaccggttcgggtaaaactacccaattaccgaaaatgtgtttggaactcgga
cgaggcgtaaaaggattaatcggacatactcaaccacgccgaattgcagctcgatctgtg
gcaacccgtattgctgaagagctgaaatcagagctgggtgagactgtcggttacaaagtc
cgttttaacgatcaagtaagtgaaaacagcttagttaaactgatgacagacggtattttg
cttgccgaaattcaaaatgatcgttacttaaatcaatacgataccctgattattgacgaa
gcccacgaacgctcgctcaataacgattttattttaggctatctcaaacaaattctacat
aaacgccccgatctgaaagtaattattacctcagccaccattgatgtagaacgcttttcc
aaacattttaacaatgcccccattattgaagtgtctgggcgaactttccctgttgaagtt
cgctaccgaccaattgtagaagaagaggagcaagaccaattacaaggtattttaaatgcc
gttgatgagctacagtctgaaggaagaggcgatattctgatttttatgaatggcgaacgg
gaaatccgtgataccgccgaagctctacaaaagcaggagcttcgccataccgaaattctg
ccactttacgctcgcttgtcagctacggagcaacaacgaattttccagccaagtggtggc
ttaaaccgcattattttagccactaacgtagcggaaacctcactgacaatcccgaatatt
aaatatgtaatcgacaccggcacggctcgtatttcccgctacagctatcgcaccaaagta
caacgcttaccgattgaaccgatttcccaagcctctgctaatcagcgaaaagggcgttgt
gggcgtatttcggaagggatttgcatccgtctctactcagaagaggatttcaacggtcgt
ccgcaatttaccgatccggaaattttacgaaccaacctcgcatctgtcattttgcaaatg
acctcgctagggctgagtgatattgcatctttcccatttgtcgatgcacctgatagccgt
caaattcaagatgggattaggttgttggaagagttgcaagcaattattcctaaccgaaac
ggagctcgcctgtctacacataaattgacactaatcggtaaacagctcgctcaactacct
gtcgatcctcgtttaggcagaatgattattgaggcatcgaaaaacggttcattgcacgaa
gtaatgatgatcgtttccgctctctctatccaagatccgagagaacgcccacaggagaaa
caacagtccgcagacgataaacatcgccgctttgccgataaagagagcgatttcttggca
tttgtgaacctttggcatttcattcaaacgcaacaaaaagagttatcgaaaaatcaattc
cgcaatctctgccgtaaggattatttaaactataatcgtgtgcgggaatggcaggatatt
taccaccaactccgtctagccgtgcgtgaaatggggctaaaaattaacagtgaagctgcc
acttatcagccgattcatactgcccttctcacagggctactatcgcatatcggtttgaaa
gataatgagaaaatgcactatttaggggcaagaaatgctcacttcttcattttcccgaac
tccgtgcttttcaaaaagcagccgaaatgggtaatggcagcagaactggtagaaaccacc
aaactttggggacgaatggttgctcgcattgagccggaatggattgagccattggcagta
catttaaccaaatccagttacagcgagccacactgggcgaagtccaaaggagctgtgatg
gcatctgaaaaagtgtcgctatttggcattccgattgtaacaaatcgccctgttaattat
ggctcaattgacccaagcatcagccgtgaaatttttatccgctcagcactggtggaaggt
gaatggcataacaattacaaatttttcaaagaaaataaccgcttgatccgtgaagtagag
gcaatggagcataaatcccgtcgtcgtgatattttagtgaacgagcaggtactgttcgaa
ttttacgatcaacgaataggtatagaggtggtgtctgccaaacactttgatacttggtgg
aaaaaggcttcgaaaagcgatcctgagctactgaactttgaaaaatcgttcttgattaac
gataatgctaacttggcgagcgagctggatttcccgaatttctggtatcaagataatctt
aaattaaaactcagctatcaatttgaagtgggtaaagatcacgatggcgtaacggtgcat
attccattgccattactcaaccaagtcgagcctgatggtttcgactggcaaattccgggg
cttcgccacgagttaattgtttctttgatcaaaagtctaccaaagtcattacgccgcaac
tttgtgcctgctcctaactatgctgatgcctttttagggcgggttgagccgtttaaaaaa
ccattattggaaagtttaagctatgaacttcgtcgaatgaccggcgtgttagttgaggct
gaacagtgggacatcagccaactaccgccgcatttgcgaatgaccttccgtgtggtagac
gacaaaggcaaaaaattacaagagagcgagaatttagacgagctgaaatttgctctaaaa
gatgaagtacagaatacgctttcaaatatcgctgatgacggcattgagcaaagcggtgtg
catatttggaattttgccgagttaccgcaattctacgaacagaagaaagcccatttcagt
gtgaaagcctaccctgcgattgtcgatgaacagagtgcagtgggcgtgaaactatttgaa
acggaatttgaacaggctcgggcaatgcaggctggtttacgccgtttattgttgctcaat
gtgccttcaccaatcaaatatctacacgaaaaactaccaaataaagctaagctcggctta
tattttgctccattcggcaaagtgatagaactgattgacgactgtatcgcctgtgcggtg
gataagttgattggggaattcggcggttttgtatggaatgaggaaaaattcaacgaactg
cacgaatatatacgagcaaatcttaatgatactactgttgagattgcaaaacaggttgaa
aaatgtttaacgttagcgtatgagctgaataaacgcctaaaaggcaaattggatttcaca
atggcatttgcgttaagtgatattaaaactcaaattgatggattgatttatcccgaattt
gtaactaaaaccggctatcaaaggttaagcgatttacaccgctatttaactgccattgaa
cgccgtttagacaaattggtcattgacagcaatacagacagagcaaaaatgctacgagta
gagcaagtgcaagaaacctataagcagctcttaaataaactaccaaaatctaagcctatg
cctgatgaggtgttggaaattcgctatatgattgaggaactacgggtcagcctgtttgct
caacagcttggtacaaagtatccgatttctgataaacgaattttaaatctgataaaagag
ctttag
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