Maize bushy stunt phytoplasma: MBSPM3_v1c0670
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Entry
MBSPM3_v1c0670 CDS
T04456
Symbol
srmB
Name
(GenBank) superfamily II DNA/RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbp
Maize bushy stunt phytoplasma
Pathway
mbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MBSPM3_v1c0670 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbp03019
]
MBSPM3_v1c0670 (srmB)
03009 Ribosome biogenesis [BR:
mbp03009
]
MBSPM3_v1c0670 (srmB)
Enzymes [BR:
mbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MBSPM3_v1c0670 (srmB)
Messenger RNA biogenesis [BR:
mbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MBSPM3_v1c0670 (srmB)
Ribosome biogenesis [BR:
mbp03009
]
Prokaryotic type
rRNA helicases
MBSPM3_v1c0670 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOF54606
LinkDB
All DBs
Position
complement(67895..69553)
Genome browser
AA seq
552 aa
AA seq
DB search
MNTLFEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP
IIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALE
AKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQT
VLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDLK
KDYSAILFANTKKDVDEITTYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATD
VAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYY
LKEKITLLDIPSVQSIKLQNAKDLEKKLLNIIEKNNKDATPNPLAQKLLETFSSEQIIQG
LLKNFLPKERNYTDILPPKMTTNNSFTRSRFGGESRFGSYSSNNSYGNNSYQRANSNFIE
VVINLGKKDNINPPILLKLLKDHFQIYGKNIGNIKHLTHETIFEVASRFWNQMKSKTNIR
FQNKTLILNKKD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttattcgaacaattacctattttagagcaaactaaaaaagctttaaaagaa
ctcaattttattgatgctactccaattcaggccttagtaattccagaaattataaaagga
catgacgtaattggacaagctcaaacaggaacaggaaaaacttttgcttttggtattccc
attatcgaaaaaattgaaccaaaaatccaaaaaactcaaagtttaattttatgccctact
agagaattaactctccaagtatacgaagaattaaaaaaattactaagattttatcaagaa
ataagaatcgctgttgtttatggtggtgaatcttacaccaaacaatttagagccctagaa
gctaaacctcatttaattattgctactcctggacgtgcaattgaccatctagaaagaggt
aaaatcgacctctcagcactaaaaattctaactcttgacgaagcagatgaaatgttaaaa
atgggattccaagaagccttagaaacaatcttaaaaaagattccagaagaaagacaaact
gttttattctcagcaactctacctccatttattaaaaaaatagcaagcaaataccaaaaa
gacactaaaatcctacaagttcctgttaaaaacattgcagttaatgcaatcgaacaaaat
tactttttagtaaaagaagttgacaaagctaaattattagtacgtttactagacttaaaa
aaagattattcagctatcttatttgcaaacactaaaaaagatgttgacgaaattacaacc
taccttcaagacaaaggctttttagctgatgcagttcacggcgatttaaaacaaaatcaa
agacaatatgtaatgaataatttccgtaaaggcaaaatcaaaatcttaattgcaactgat
gtagctgcaagaggacttgacatttctgacatcaaaatggtaattaactatgacttacca
cacgaagacgaagtttatgttcaccgtatcggaagaactggaagagctggcaaaaaaggt
ttagcttacagtttaattagcccaagaaaagtaagccaacttaaaaaattagaatactac
ttaaaagaaaaaattactttactagatattccttctgttcaaagcataaaattacaaaat
gccaaagatttagaaaaaaagctattaaacatcattgaaaaaaacaacaaagacgctact
ccaaatccattagcacaaaagttattagaaactttttcttctgaacaaattatccaagga
ttattgaaaaactttttaccaaaagaaagaaattacactgacatccttcctccaaaaatg
actactaacaattcttttaccagatcacgttttggtggcgaatctagatttggttcttat
agttctaacaactcttacggcaataactcttaccaaagagcaaatagcaactttatagaa
gtagttattaatttaggcaaaaaagacaatattaatcctccaatattattaaaattatta
aaagaccatttccaaatttatggcaaaaatattggcaatatcaaacacttaactcacgaa
actatttttgaagtagcaagtcgtttttggaatcaaatgaaaagcaaaactaatattcgt
ttccaaaacaaaactttaattcttaacaaaaaagattaa
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