Maize bushy stunt phytoplasma: MBSPM3_v1c1120
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Entry
MBSPM3_v1c1120 CDS
T04456
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mbp
Maize bushy stunt phytoplasma
Pathway
mbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MBSPM3_v1c1120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbp03019
]
MBSPM3_v1c1120
Messenger RNA biogenesis [BR:
mbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MBSPM3_v1c1120
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B_6
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AOF54646
UniProt:
A0ABN4RYB5
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All DBs
Position
117132..118820
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AA seq
562 aa
AA seq
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MNDIKFFALGGLGESGKNFYVLQINESYFLLDAGLKYPNTALYGIDSMIADYYKLQDIKD
KIKGVFLSSAFETNLGALPYLMKDFDIPVYASYFTMQVLKAHFQSHKINYRNFNLQIVKS
DERLIFDDVSVAFFATSQLIPETLGMVFQTKRGSIIYSGDLKLLHSKNKFFQTNFTRLAQ
LAQPKVLAFLPSCRGAFSTSAHNNDASSFEHKLNKYFSNHLLKSEGIIVIPSLMPDLLKI
QSIVDLACRLNFKITFLGRKSEKIIDIALKKGFLKVPSFNLVELKTLEDSKKHPKLVVFV
LGKHFESLFHLQKMCQKTDTLIHLTPQDLVLLMSKEMAGIAKMQSQTLDLLSRHNIQAHV
LVKDLDACSNDYEKTLKLMLNFLKPQYIIPVMGEYRHQYQVQKIAQSLGFKLNQTFLLEN
GSIWHCDPQKDAFAESNTGVLTEILIDGTPVIGGQDFIMKDRELLAADGVVIVVANVNAK
HKKIVGAPQLVSKGFLADSETSHIFPKLKAIFDEKSEIFLKKKYLKWNDFKKNIRESLVK
FLFKETKKRPIVIPIFISVKSE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgacattaaattttttgctttaggaggactgggcgaaagtggaaaaaatttttac
gtcttgcaaattaacgaatcttattttttacttgatgctggactaaaatatcccaatacc
gctctttatggcatcgattctatgattgctgattattacaaattacaagatatcaaagac
aagattaaaggcgtttttttatcatcagcttttgaaaccaatttgggtgccttgccttac
ttgatgaaagattttgacatccctgtttatgcttcttattttacgatgcaagttctaaaa
gcgcattttcaaagtcataaaattaattaccgcaattttaatctacaaatcgttaaaagc
gatgaaagacttatttttgatgatgtgtcagtggctttttttgctacatcgcaattgatt
cctgaaacattgggaatggtttttcaaactaaacgaggtagcatcatttactctggcgac
cttaaattattgcattctaaaaataaattttttcaaactaattttacaagattagctcaa
ttagcacaacccaaagtacttgcctttttgccttcttgtcgtggggcttttagcacatct
gcgcataataatgatgcatcgagttttgagcacaaattgaataaatattttagcaatcac
ttgcttaaatccgaaggtattattgttattccttctttgatgcctgatttgttaaaaatt
caatccatagtggatttggcatgtagacttaattttaaaataacttttttaggtagaaaa
agtgaaaaaattattgatattgccttgaaaaaaggttttttaaaagtgccttccttcaat
ttagtggaattaaaaacactagaagactccaaaaaacatccaaaattagttgtctttgtg
ctaggtaaacattttgaatctttgtttcatttgcaaaaaatgtgtcaaaaaacagacact
ttaattcatttaacgccccaagatttagtgttgttaatgtccaaagaaatggcaggaatt
gccaaaatgcaatctcaaaccctagatcttttgtcacgccacaatattcaagcccatgtt
ttggtaaaagacttagacgcttgttccaatgattatgaaaaaaccctcaaattgatgctt
aattttttaaaacctcaatacattattcctgttatgggtgaatatcgtcatcaatatcaa
gtgcaaaaaattgcccaaagtttaggattcaaactcaaccaaactttcttgttagaaaat
ggcagtatttggcattgtgacccacaaaaagatgcctttgccgaatctaatactggcgtt
cttacagaaattttaattgatggtactcctgttattggtgggcaagattttattatgaaa
gaccgtgaacttttagcagcggatggagttgtaattgttgttgccaatgttaatgctaaa
cacaaaaaaatagtaggtgctccacaattagtaagtaaaggctttttggcagattctgaa
actagtcatatttttcctaagttaaaagctatttttgatgaaaaaagtgaaatttttttg
aaaaaaaagtatcttaaatggaatgatttcaaaaaaaatattagagaatcattagttaaa
tttttattcaaagaaactaaaaaaagacctattgttattcctattttcattagtgttaaa
agtgaataa
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